; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009728 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009728
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionVQ motif-containing protein 8, chloroplastic
Genome locationscaffold7:4225266..4225766
RNA-Seq ExpressionSpg009728
SyntenySpg009728
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-3154.22Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD
        MSP K   ++GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHTQPKDFMALVQRLTG +P +A        K PSD      +NDSSSV+T+
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD

Query:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        +++N                   PLFTPRS                 LVNSLSPSFMEFLKGLPEF
Subjt:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]2.8e-3455.42Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD
        MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGF P            PP   +RN NDNDS+S +T 
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD

Query:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        +E+ N+ +                      S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Subjt:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]9.7e-4364.8Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPP--SDSDRNLN---DNDSS
        MSPAKSCD+NGPRPSPLLIHK SRLIRK P  PQLRQP+IIYTHSPKIIHTQPKDFMALVQRLTGFTP            PP   DSDRN N   DNDSS
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPP--SDSDRNLN---DNDSS

Query:  SVLTDDENNNDGRR--------PHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        SVLT++ N  D             +  + SFL+ D PLFTP    LRY+  D   F+SPGL NSLSPSFMEFLKGLPEF
Subjt:  SVLTDDENNNDGRR--------PHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

XP_027096313.1 VQ motif-containing protein 8, chloroplastic-like [Coffea arabica]8.3e-2644.97Show/hide
Query:  LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLND
        +NGPRPSPL I+KDS +I          +KAP++        Q RQPVIIYTHSPKIIHT+PKDFMALVQ+LTGF+ S+    +   ++       +  D
Subjt:  LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLND

Query:  NDSSSVLTDDENNNDGRRPHRDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        NDSSSV +DD+   D        +SS +S           D PLFTP S+L         +    F+SP +V+SLSPSF+EF+KGLPE+
Subjt:  NDSSSVLTDDENNNDGRRPHRDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLSPSFMEFLKGLPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]9.7e-4365.66Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD
        MSP KSC++NGPRPSPLLIHKDSR IRK    PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGF P     P   L    S S+RN NDNDSSS LT 
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD

Query:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        +E  N+      D   S +          SSLLRYSS  T PFSSP L+NSLSPSFMEFLK LPEF
Subjt:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein4.4e-3357.74Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD
        MSP KS ++NGPRPSPLLIH  SRLIRK     QLRQP+IIYTHSPKIIHT PKDFMALVQRLTG  P     P       PS S+RNLNDNDSSS +T 
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD

Query:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFD-TAPFSSPG-LVNSLSPSFMEFLKGLPEF
        +E+ N+ +                      S+L+YSS D T PFSSP  L +SLSPSFM+FLK LPEF
Subjt:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFD-TAPFSSPG-LVNSLSPSFMEFLKGLPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like1.4e-3455.42Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD
        MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGF P            PP   +RN NDNDS+S +T 
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD

Query:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        +E+ N+ +                      S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Subjt:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

A0A5D3CFH5 VQ motif-containing protein 81.4e-3455.42Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD
        MSP KS  +NG RPSPLLIH DSRL+RK    PQLRQP+IIYTHSPKIIHT PKDFMALVQRLTGF P            PP   +RN NDNDS+S +T 
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTD

Query:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        +E+ N+ +                      S+L+YSS  T PFSSP  ++SLSPSFM+FLK LPEF
Subjt:  DENNNDGRRPHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic4.7e-4364.8Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPP--SDSDRNLN---DNDSS
        MSPAKSCD+NGPRPSPLLIHK SRLIRK P  PQLRQP+IIYTHSPKIIHTQPKDFMALVQRLTGFTP            PP   DSDRN N   DNDSS
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPP--SDSDRNLN---DNDSS

Query:  SVLTDDENNNDGRR--------PHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        SVLT++ N  D             +  + SFL+ D PLFTP    LRY+  D   F+SPGL NSLSPSFMEFLKGLPEF
Subjt:  SVLTDDENNNDGRR--------PHRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF

A0A6P6V0F4 VQ motif-containing protein 8, chloroplastic-like4.0e-2644.97Show/hide
Query:  LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLND
        +NGPRPSPL I+KDS +I          +KAP++        Q RQPVIIYTHSPKIIHT+PKDFMALVQ+LTGF+ S+    +   ++       +  D
Subjt:  LNGPRPSPLLIHKDSRLI----------RKAPQQ-------PQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLND

Query:  NDSSSVLTDDENNNDGRRPHRDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLSPSFMEFLKGLPEF
        NDSSSV +DD+   D        +SS +S           D PLFTP S+L         +    F+SP +V+SLSPSF+EF+KGLPE+
Subjt:  NDSSSVLTDDENNNDGRRPHRDCNSSFLS----------DDAPLFTPRSSLLRYSS----FDTAPFSSPGLVNSLSPSFMEFLKGLPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B2.4e-0745.45Show/hide
Query:  GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GP+P+PL +  DS ++I+K         PQ PQ  Q           PV IYT +P+IIHT P +FM LVQRLTG T
Subjt:  GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q8LGD5 Protein MKS16.6e-1046.38Show/hide
Query:  GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GPRPSPL +HKDS  I+K P+ P              R+PV+IY  SPK++H    +FM +VQRLTG +
Subjt:  GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q9CA36 VQ motif-containing protein 8, chloroplastic4.1e-1235.58Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDS
        M P +  ++NG RPS L +  +S  I+K       P+      PVIIY HSPK+IHT+ +DFMALVQRLTG          + +++  S+S        S
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDS

Query:  SSVLTDDENNNDGRRP---HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP
        SSV+T++ N  D        +D        D PLFTP SS+  + S     + SP   +S  P
Subjt:  SSVLTDDENNNDGRRP---HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP

Q9LS54 VQ motif-containing protein 206.6e-1034.62Show/hide
Query:  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSD--------------AARPQQTLQKPPSDSDRNLN-
        P P  L ++KDS +I+K P           R PVIIYTH+P+IIHT PKDFMALVQ+LTG T SD                   +T+ +P  D   N N 
Subjt:  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSD--------------AARPQQTLQKPPSDSDRNLN-

Query:  -----------------------------DNDSSSVLTDDENNNDGRRPHRDCNSS
                                     D++SSSV+T +EN  +    H   NSS
Subjt:  -----------------------------DNDSSSVLTDDENNNDGRRPHRDCNSS

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding1.7e-0845.45Show/hide
Query:  GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GP+P+PL +  DS ++I+K         PQ PQ  Q           PV IYT +P+IIHT P +FM LVQRLTG T
Subjt:  GPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT

AT1G21326.1 VQ motif-containing protein6.8e-1046.99Show/hide
Query:  KSCDLNGPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +S  + GPRP PL +  DS ++I+K         PQ PQ  Q           PVIIYT SP+IIHT P +FM LVQRLTG T
Subjt:  KSCDLNGPRPSPLLIHKDS-RLIRK--------APQQPQLRQ-----------PVIIYTHSPKIIHTQPKDFMALVQRLTGFT

AT1G68450.1 VQ motif-containing protein2.9e-1335.58Show/hide
Query:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDS
        M P +  ++NG RPS L +  +S  I+K       P+      PVIIY HSPK+IHT+ +DFMALVQRLTG          + +++  S+S        S
Subjt:  MSPAKSCDLNGPRPSPLLIHKDSRLIRKA------PQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDS

Query:  SSVLTDDENNNDGRRP---HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP
        SSV+T++ N  D        +D        D PLFTP SS+  + S     + SP   +S  P
Subjt:  SSVLTDDENNNDGRRP---HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSP

AT3G18360.1 VQ motif-containing protein4.7e-1134.62Show/hide
Query:  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSD--------------AARPQQTLQKPPSDSDRNLN-
        P P  L ++KDS +I+K P           R PVIIYTH+P+IIHT PKDFMALVQ+LTG T SD                   +T+ +P  D   N N 
Subjt:  PRPSPLLIHKDSRLIRKAPQQPQL------RQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSD--------------AARPQQTLQKPPSDSDRNLN-

Query:  -----------------------------DNDSSSVLTDDENNNDGRRPHRDCNSS
                                     D++SSSV+T +EN  +    H   NSS
Subjt:  -----------------------------DNDSSSVLTDDENNNDGRRPHRDCNSS

AT3G18690.1 MAP kinase substrate 14.7e-1146.38Show/hide
Query:  GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GPRPSPL +HKDS  I+K P+ P              R+PV+IY  SPK++H    +FM +VQRLTG +
Subjt:  GPRPSPLLIHKDSRLIRKAPQQPQ------------LRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCA
GCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGC
CTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCT
CACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGG
TTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCAGCTAAATCCTGCGACCTCAATGGCCCTCGCCCGTCTCCTCTCCTAATTCACAAAGATTCTCGCTTGATTCGCAAGGCTCCTCAGCAGCCGCAGCTCCGGCA
GCCCGTCATAATCTACACCCATTCCCCGAAAATCATCCACACGCAGCCCAAGGATTTCATGGCCCTCGTCCAACGCCTCACCGGCTTCACGCCCTCCGACGCCGCCCGGC
CTCAACAAACGCTTCAGAAACCGCCCTCCGACTCCGACAGGAATCTCAACGACAATGATTCTTCCTCGGTTCTCACGGACGACGAGAATAATAACGACGGCCGTCGTCCT
CACAGAGATTGTAATTCGTCGTTTTTGTCCGATGATGCTCCTCTGTTCACTCCTCGTTCTTCGCTTCTCAGATATTCTTCTTTCGATACGGCGCCGTTTTCGTCTCCTGG
TTTGGTTAACTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGCCTCCCTGAATTTTAA
Protein sequenceShow/hide protein sequence
MSPAKSCDLNGPRPSPLLIHKDSRLIRKAPQQPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLTGFTPSDAARPQQTLQKPPSDSDRNLNDNDSSSVLTDDENNNDGRRP
HRDCNSSFLSDDAPLFTPRSSLLRYSSFDTAPFSSPGLVNSLSPSFMEFLKGLPEF