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Spg009729 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009729
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionChorismate synthase
Genome locationscaffold7:6079266..6079722
RNA-Seq ExpressionSpg009729
SyntenySpg009729
Gene Ontology termsGO:0008652 - cellular amino acid biosynthetic process (biological process)
GO:0009073 - aromatic amino acid family biosynthetic process (biological process)
GO:0009423 - chorismate biosynthetic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:0004107 - chorismate synthase activity (molecular function)
GO:0010181 - FMN binding (molecular function)
InterPro domainsIPR000453 - Chorismate synthase
IPR020541 - Chorismate synthase, conserved site
IPR035904 - Chorismate synthase AroC superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXP11716.1 chorismate synthase [Senna obtusifolia]9.7e-1757.89Show/hide
Query:  ASSPLLLGSGGFSISRSDLMTSKLFSTSSLSI-AAVRSR--KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        A+ P L  S   + S S  + S L S SS+S+  +VR R  K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPR  LSEAD+Q +L+RR
Subjt:  ASSPLLLGSGGFSISRSDLMTSKLFSTSSLSI-AAVRSR--KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

KDO42595.1 hypothetical protein CISIN_1g013280mg [Citrus sinensis]7.4e-1769.84Show/hide
Query:  RSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRRVVPSTR
        R+ K   ++AAG++FGTYFRVTTFGESHGGGVGC+IDGCPPR  LSEAD+Q +L+RR+V S R
Subjt:  RSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRRVVPSTR

XP_022134022.1 chorismate synthase, chloroplastic-like [Momordica charantia]4.4e-1765.12Show/hide
Query:  GSGGFSISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        G  G S   SDL  SKL FS   +S+ + RS K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPRR L+EADLQ EL+RR
Subjt:  GSGGFSISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

XP_022938712.1 chorismate synthase, chloroplastic-like [Cucurbita moschata]9.7e-1760.61Show/hide
Query:  ASASSPLLLGSG---GFS-ISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        +S SS   LGS    GFS  S      SKL FS + +S+   R+ K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPRRR+SEADLQ EL+RR
Subjt:  ASASSPLLLGSG---GFS-ISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

XP_022990355.1 chorismate synthase, chloroplastic-like [Cucurbita maxima]1.7e-1658.59Show/hide
Query:  ASASSPLLLGSG---GFS--ISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        AS SS   LGS    GFS   SRS  ++   FS   +S+   R+ K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPR  +SEADLQ EL+RR
Subjt:  ASASSPLLLGSG---GFS--ISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

TrEMBL top hitse value%identityAlignment
A0A067DLZ9 Chorismate synthase3.6e-1769.84Show/hide
Query:  RSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRRVVPSTR
        R+ K   ++AAG++FGTYFRVTTFGESHGGGVGC+IDGCPPR  LSEAD+Q +L+RR+V S R
Subjt:  RSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRRVVPSTR

A0A346I7J6 Chorismate synthase4.7e-1757.89Show/hide
Query:  ASSPLLLGSGGFSISRSDLMTSKLFSTSSLSI-AAVRSR--KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        A+ P L  S   + S S  + S L S SS+S+  +VR R  K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPR  LSEAD+Q +L+RR
Subjt:  ASSPLLLGSGGFSISRSDLMTSKLFSTSSLSI-AAVRSR--KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

A0A6J1BYD9 Chorismate synthase2.1e-1765.12Show/hide
Query:  GSGGFSISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        G  G S   SDL  SKL FS   +S+ + RS K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPRR L+EADLQ EL+RR
Subjt:  GSGGFSISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

A0A6J1FEV4 Chorismate synthase4.7e-1760.61Show/hide
Query:  ASASSPLLLGSG---GFS-ISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        +S SS   LGS    GFS  S      SKL FS + +S+   R+ K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPRRR+SEADLQ EL+RR
Subjt:  ASASSPLLLGSG---GFS-ISRSDLMTSKL-FSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

A0A6J1JPW2 Chorismate synthase8.0e-1758.59Show/hide
Query:  ASASSPLLLGSG---GFS--ISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        AS SS   LGS    GFS   SRS  ++   FS   +S+   R+ K   I+AAG++FG YFRVTT+GESHGGGVGCVIDGCPPR  +SEADLQ EL+RR
Subjt:  ASASSPLLLGSG---GFS--ISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

SwissProt top hitse value%identityAlignment
P27793 Chorismate synthase, chloroplastic9.5e-1551.72Show/hide
Query:  GSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTG--IRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        GSG      SDL   +  S  S+ I+  R        ++A+G+SFG  F+VTT+GESHGGGVGCVIDGCPPR  +SEAD+Q++L+RR
Subjt:  GSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTG--IRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

P57720 Chorismate synthase, chloroplastic1.9e-1548.94Show/hide
Query:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        +S +S  +LGS     S       +L S +       ++RK   I+A G+S+GT+FRV+TFGESHGGGVGC+IDGCPPR  L+E+DLQ +L+RR
Subjt:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

Q42884 Chorismate synthase 1, chloroplastic2.0e-1756.32Show/hide
Query:  SRSDLMTSKL--------FSTSSLSIAAVRSR-KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        S SD+ +S+L        FS+S+  + +  S+ K   I+AAG++FG YFRVTTFGESHGGGVGC+IDGCPPR  LSE+D+Q EL+RR
Subjt:  SRSDLMTSKL--------FSTSSLSIAAVRSR-KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

Q42885 Chorismate synthase 2, chloroplastic7.0e-1863.41Show/hide
Query:  FSISRSDLMTSKLFSTSSLSIAAVRSR-KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        FS   S    SKL S S+L     RS+ K   I+AAGN+FG YFRVTTFGESHGGGVGC+IDGCPPR  LSE+D+Q EL+RR
Subjt:  FSISRSDLMTSKLFSTSSLSIAAVRSR-KVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

Q8DLM1 Chorismate synthase3.6e-1476.09Show/hide
Query:  GNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        GN+FG  FRVTTFGESHGGGVG V+DGCPPR  LSE D+Q EL+RR
Subjt:  GNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

Arabidopsis top hitse value%identityAlignment
AT1G48850.1 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative1.4e-1648.94Show/hide
Query:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        +S +S  +LGS     S       +L S +       ++RK   I+A G+S+GT+FRV+TFGESHGGGVGC+IDGCPPR  L+E+DLQ +L+RR
Subjt:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

AT1G48850.2 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative1.4e-1648.94Show/hide
Query:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        +S +S  +LGS     S       +L S +       ++RK   I+A G+S+GT+FRV+TFGESHGGGVGC+IDGCPPR  L+E+DLQ +L+RR
Subjt:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR

AT1G48850.3 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative1.4e-1648.94Show/hide
Query:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR
        +S +S  +LGS     S       +L S +       ++RK   I+A G+S+GT+FRV+TFGESHGGGVGC+IDGCPPR  L+E+DLQ +L+RR
Subjt:  ASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCGCTTCCTCACCGCTGCTGCTCGGCTCCGGCGGCTTCTCAATTTCACGCTCCGATCTGATGACTTCGAAGCTCTTTTCTACATCTTCACTCTCCATCGCCGC
CGTCAGATCTCGGAAAGTCACCGGAATACGCGCCGCCGGCAACTCCTTCGGCACTTACTTCCGCGTTACGACGTTCGGAGAGTCGCACGGTGGCGGCGTTGGCTGCGTTA
TCGACGGTTGTCCTCCTCGCCGCCGCCTCTCCGAAGCCGATCTGCAGGCCGAGCTCAACCGAAGGGTTGTACCTTCGACCCGAGACTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCGCTTCCTCACCGCTGCTGCTCGGCTCCGGCGGCTTCTCAATTTCACGCTCCGATCTGATGACTTCGAAGCTCTTTTCTACATCTTCACTCTCCATCGCCGC
CGTCAGATCTCGGAAAGTCACCGGAATACGCGCCGCCGGCAACTCCTTCGGCACTTACTTCCGCGTTACGACGTTCGGAGAGTCGCACGGTGGCGGCGTTGGCTGCGTTA
TCGACGGTTGTCCTCCTCGCCGCCGCCTCTCCGAAGCCGATCTGCAGGCCGAGCTCAACCGAAGGGTTGTACCTTCGACCCGAGACTACTAG
Protein sequenceShow/hide protein sequence
MASASSPLLLGSGGFSISRSDLMTSKLFSTSSLSIAAVRSRKVTGIRAAGNSFGTYFRVTTFGESHGGGVGCVIDGCPPRRRLSEADLQAELNRRVVPSTRDY