; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009875 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009875
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationscaffold7:9064132..9065292
RNA-Seq ExpressionSpg009875
SyntenySpg009875
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAK39575.1 putative reverse transcriptase [Oryza sativa Japonica Group]3.8e-0746.34Show/hide
Query:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI
        R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S Y L   LV     +SS T+ I
Subjt:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI

AAQ19327.1 bZIP-like protein [Oryza sativa Japonica Group]3.8e-0746.34Show/hide
Query:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI
        R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S Y L   LV     +SS T+ I
Subjt:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI

ABA91072.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]1.7e-0746.99Show/hide
Query:  VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSS
        +R   R + VS LI +DG+ DVA++R  FL  D E IL I LS ++E+D + W PD  GRFSV+S Y L   L  +  G+SSS
Subjt:  VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSS

EEC68887.1 hypothetical protein OsI_37529 [Oryza sativa Indica Group]3.8e-0746.34Show/hide
Query:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI
        R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S Y L   LV     +SS T+ I
Subjt:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI

XP_025877668.1 uncharacterized protein LOC4351546 [Oryza sativa Japonica Group]3.8e-0746.34Show/hide
Query:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI
        R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S Y L   LV     +SS T+ I
Subjt:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI

TrEMBL top hitse value%identityAlignment
A0A803NVH0 Uncharacterized protein6.4e-0828.29Show/hide
Query:  TVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASS---STDKIFRKGDQLHPTSMAYLGVK
        TVS L+  D   D+  +   FL  DVE IL IPLS    +D + W  +  G ++VKS Y + +SL +     S    +TD    K  Q+  T    + ++
Subjt:  TVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASS---STDKIFRKGDQLHPTSMAYLGVK

Query:  KSPDLSQGREISIGMGSSGVDMLKMQAIQVGLLAVGEMGLPRLMVELDCLVLVNLLNGVDEKFTLVRSIAMEVRKLSSCLVGIQFKHNRRGQNLVADMLA
         S         S   G S  + ++  A+   L  + ++ LP   +E D LV+VN L       +    +  ++  L S   G+   H +RG N+ A  LA
Subjt:  KSPDLSQGREISIGMGSSGVDMLKMQAIQVGLLAVGEMGLPRLMVELDCLVLVNLLNGVDEKFTLVRSIAMEVRKLSSCLVGIQFKHNRRGQNLVADMLA

Query:  RRVMS
        +  +S
Subjt:  RRVMS

B8BN96 Reverse transcriptase domain-containing protein1.9e-0746.34Show/hide
Query:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI
        R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S Y L   LV     +SS T+ I
Subjt:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI

C7J8D0 Os11g0106066 protein8.3e-0846.99Show/hide
Query:  VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSS
        +R   R + VS LI +DG+ DVA++R  FL  D E IL I LS ++E+D + W PD  GRFSV+S Y L   L  +  G+SSS
Subjt:  VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSS

Q0IPZ9 Os12g0156200 protein1.9e-0746.34Show/hide
Query:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI
        R + VS LI EDGS DV K+   F   D E IL I +S + E+D I W PD  G FSV+S Y L   LV     +SS T+ I
Subjt:  RSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKI

Q2RBM8 Retrotransposon protein, putative, unclassified8.3e-0846.99Show/hide
Query:  VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSS
        +R   R + VS LI +DG+ DVA++R  FL  D E IL I LS ++E+D + W PD  GRFSV+S Y L   L  +  G+SSS
Subjt:  VRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTTCGGGATGAGCTTCGTTCAGAGACAGTGTCCTCATTGATTATGGAGGATGGGTCCTTGGATGTGGCGAAGGTGCGGGGGGACTTTCTGCGGGATGATGTTGA
ACATATTTTGGTTATACCATTAAGTGGTCAAAGAGAGGACGATGAGATTTGTTGGGTGCCCGATGGTAAGGGGCGTTTTTCTGTGAAAAGTGTTTATGCGCTTGGGGTAA
GTTTGGTCAAAGATGCATATGGTGCATCGTCCTCCACAGATAAGATCTTTCGCAAGGGAGATCAACTTCATCCTACTTCTATGGCATATTTGGGAGTTAAGAAATCGCCA
GATCTTTCGCAAGGGAGAGAGATCTCCATTGGGATGGGCTCCTCGGGGGTGGATATGTTGAAAATGCAGGCAATTCAGGTTGGATTGTTGGCTGTTGGTGAGATGGGGCT
TCCTCGATTGATGGTGGAGTTAGATTGTTTGGTTCTTGTAAATCTCTTGAATGGTGTGGATGAGAAATTCACTTTAGTTCGTTCTATTGCTATGGAGGTGCGGAAGCTTT
CTTCTTGTTTGGTGGGGATACAGTTTAAGCATAATCGACGAGGCCAAAATTTAGTGGCTGATATGTTGGCGCGACGAGTAATGAGTAATGGGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTTCGGGATGAGCTTCGTTCAGAGACAGTGTCCTCATTGATTATGGAGGATGGGTCCTTGGATGTGGCGAAGGTGCGGGGGGACTTTCTGCGGGATGATGTTGA
ACATATTTTGGTTATACCATTAAGTGGTCAAAGAGAGGACGATGAGATTTGTTGGGTGCCCGATGGTAAGGGGCGTTTTTCTGTGAAAAGTGTTTATGCGCTTGGGGTAA
GTTTGGTCAAAGATGCATATGGTGCATCGTCCTCCACAGATAAGATCTTTCGCAAGGGAGATCAACTTCATCCTACTTCTATGGCATATTTGGGAGTTAAGAAATCGCCA
GATCTTTCGCAAGGGAGAGAGATCTCCATTGGGATGGGCTCCTCGGGGGTGGATATGTTGAAAATGCAGGCAATTCAGGTTGGATTGTTGGCTGTTGGTGAGATGGGGCT
TCCTCGATTGATGGTGGAGTTAGATTGTTTGGTTCTTGTAAATCTCTTGAATGGTGTGGATGAGAAATTCACTTTAGTTCGTTCTATTGCTATGGAGGTGCGGAAGCTTT
CTTCTTGTTTGGTGGGGATACAGTTTAAGCATAATCGACGAGGCCAAAATTTAGTGGCTGATATGTTGGCGCGACGAGTAATGAGTAATGGGATTTAG
Protein sequenceShow/hide protein sequence
MGVRDELRSETVSSLIMEDGSLDVAKVRGDFLRDDVEHILVIPLSGQREDDEICWVPDGKGRFSVKSVYALGVSLVKDAYGASSSTDKIFRKGDQLHPTSMAYLGVKKSP
DLSQGREISIGMGSSGVDMLKMQAIQVGLLAVGEMGLPRLMVELDCLVLVNLLNGVDEKFTLVRSIAMEVRKLSSCLVGIQFKHNRRGQNLVADMLARRVMSNGI