CuGenDBv2

Gene ID	Spg009913
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 25
Genome location	scaffold7:3921910..3929215
RNA-Seq Expression	Spg009913
Synteny	Spg009913
Gene Ontology terms	NA
InterPro domains	IPR045105 - Med25/PTOV1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008446563.1 PREDICTED: mediator of RNA polymerase II transcription subunit 25 [Cucumis melo]

2.1e-36

81.82

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P  + R+ +GYR ASASD+LAANWPQTM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

XP_009109890.1 mediator of RNA polymerase II transcription subunit 25 isoform X1 [Brassica rapa]

1.6e-36

76.42

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
        P L+ R+ +GYR+A+ASD LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPGV
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV

Query:  NTLPDV
        +   D+
Subjt:  NTLPDV

XP_013630095.1 PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X1 [Brassica oleracea var. oleracea]

1.6e-36

76.42

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
        P L+ R+ +GYR+A+ASD LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPGV
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV

Query:  NTLPDV
        +   D+
Subjt:  NTLPDV

XP_022545963.1 mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Brassica napus]

1.6e-36

76.42

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
        P L+ R+ +GYR+A+ASD LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPGV
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV

Query:  NTLPDV
        +   D+
Subjt:  NTLPDV

XP_028951362.1 mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Malus domestica]

1.9e-37

78.5

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
        P  + R+ +GYR ASAS+ LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KAYRLIG LFPG+
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV

Query:  NTLPDVR
        N LP V+
Subjt:  NTLPDVR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT51 Mediator of RNA polymerase II transcription subunit 25

2.1e-37

80.58

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
        P  + R+ +GYR ASASD+LAANWPQTM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPGV
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV

Query:  NTL
          L
Subjt:  NTL

A0A1S3BFC2 Mediator of RNA polymerase II transcription subunit 25

1.0e-36

81.82

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P  + R+ +GYR ASASD+LAANWPQTM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

A0A2I0J6M7 Uncharacterized protein

1.0e-36

84.21

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Query:  RVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
        +V +GYR ASAS+ LA NWPQTM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KAYRLIG LFPGV
Subjt:  RVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV

A0A6A2YPS9 Mediator of RNA polymerase II transcription subunit 25

1.8e-36

80.81

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P  + R+ +GYR ASAS+ LAA+WPQTM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KAYRLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

A0A6J1DBP2 Mediator of RNA polymerase II transcription subunit 25

1.0e-36

81.82

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P  + R+ +GYR ASASD+LAANWPQTM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

SwissProt top hits

e value

%identity

Alignment

A0A3Q7JC00 Mediator of RNA polymerase II transcription subunit 25

2.6e-37

78.79

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P  + R+ +GYR ASAS+ LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA+NQHGFL QLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

Q7XYY2 Mediator of RNA polymerase II transcription subunit 25

5.3e-38

79.8

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P L+ R+ +GYR ASASD LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

Arabidopsis top hits

e value

%identity

Alignment

AT1G25540.1 phytochrome and flowering time regulatory protein (PFT1)

3.8e-39

79.8

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P L+ R+ +GYR ASASD LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

AT1G25540.2 phytochrome and flowering time regulatory protein (PFT1)

3.8e-39

79.8

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Query:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        P L+ R+ +GYR ASASD LAANWP TM IVRLISQD +NNKQYVGKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  PALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

Sequences

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CDS sequence

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ATGCACCGATTAAGAACGGCGGCTAGGGTTCCGGCGTTGGTGGCTAGGGTTTCTAAGGGTTACAGGCATGCTTCAGCTTCTGATGAGCTTGCAGCAAACTGGCCACAGAC
AATGCTAATAGTTCGCCTTATCTCACAAGATCGCGTTAATAACAAGCAATATGTTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTTTGAATCAGCACGGGTTTCTTGGCC
AGCTTCAAGAAAAGAAACTTTGTGCAGTCATCCAGTTACCATCCCAGACTTTACTACTATCTATTTTTGAAAAAGCTTACCGCTTGATAGGGACGCTTTTTCCTGGGGTC
AATACATTACCAGATGTTCGTTGA

mRNA sequence

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Protein sequence

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MHRLRTAARVPALVARVSKGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGV
NTLPDVR

Spg009913 (gene) of Sponge gourd (cylindrica) v1 genome