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Spg009926 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009926
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationscaffold7:5056485..5057280
RNA-Seq ExpressionSpg009926
SyntenySpg009926
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3689.53Show/hide
Query:  DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        DMDTSNPAVF NGELLNMH GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLM+FVEV+GIAE NKIIN E+WTDFGNTF
Subjt:  DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

KAG6601225.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3787.64Show/hide
Query:  DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIY
        DMDTSNPAVF NGELLNM+ GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLM+FVEV+GIAE NKIIN E+WTDFGNTFG+Y
Subjt:  DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIY

KAG7032018.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]4.1e-3689.53Show/hide
Query:  DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        DMDTSNPAVF NGELLNMH GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLM+FVEV+GIAE NKIIN E+WTDFGNTF
Subjt:  DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.9e-3487.06Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTSNPAVF NGELLN+H GRKIRAVVQVIQSDGG+VTGKSTDEQ LTVHGLPTVPLM+FVEV+GIAE NKIIN E+WTDFG TF
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]3.8e-3487.06Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQSDGGIVTGKSTDEQ LT+ GLPTVPLM+FVEV+GIAE+NKIIN E+WTDFG TF
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein1.2e-3385.88Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQSDGGIVTGKSTDEQ LT+HGLPTVP M+FVEV+GIAESNK I  E+WTDFG TF
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

A0A1S3BGM8 replication protein A 14 kDa subunit B-like5.3e-3485.88Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQSDGGIVTGKSTDEQ LT+HGLPTVP M+FVEV+GIA+SNK IN E+WTDFG TF
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

A0A251JZ60 Uncharacterized protein4.5e-3361.74Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYNNPFTLYSILQS
        MDTSNPA+FVNGE L M++G+K+RAVVQ+I+SDG  + GKSTDE   T+ GL + PLMS+VEVIG+AESN+ I  E WTDFGN+FG      T   ++QS
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYNNPFTLYSILQS

Query:  AVPTCKWGIQKFISL
         +PTCKWGIQ+FIS+
Subjt:  AVPTCKWGIQKFISL

A0A5A7SU42 Replication protein A 14 kDa subunit B-like5.3e-3485.88Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTSNPAVFVNGELL+MH GRKIRAVVQVIQSDGGIVTGKSTDEQ LT+HGLPTVP M+FVEV+GIA+SNK IN E+WTDFG TF
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

A0A6J1JC99 replication protein A 14 kDa subunit B-like1.6e-3385.88Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTSNPAVF NGELLNMH GRKIRAVVQVIQSD G+VTGKSTDEQ LTVHGLPTVPLM+FVEV+GIAE NKIIN E+WTDFG  F
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.1e-2358.43Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN
        MDTS+PA FVNG LL  +IG+K+RAV+QVI+SD G V GKSTD+Q + V G P  PL +++EVIGIAE++  I AE WT+FG++F + N
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN

Q9LXK1 Replication protein A 14 kDa subunit A2.5e-2055.56Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHG-LPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN
        MDTS+P+ FVNG LL   IG+K+R V+QV  S+ G V GKSTD+  + V G  P  PL +++EVIGIAES+  I AE WT+FGNTF   N
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHG-LPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN

Q9SDK9 Replication protein A 14 kDa subunit9.4e-2052.94Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF
        MDTS PA FVNGE+L M +GR++R VVQ  + +GG++ G+STD   LT+ G    P+  +VE+IGIAE N+ I AE  TDFG  F
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTF

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein1.8e-2155.56Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHG-LPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN
        MDTS+P+ FVNG LL   IG+K+R V+QV  S+ G V GKSTD+  + V G  P  PL +++EVIGIAES+  I AE WT+FGNTF   N
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHG-LPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein1.8e-2155.56Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHG-LPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN
        MDTS+P+ FVNG LL   IG+K+R V+QV  S+ G V GKSTD+  + V G  P  PL +++EVIGIAES+  I AE WT+FGNTF   N
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHG-LPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein7.6e-2558.43Show/hide
Query:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN
        MDTS+PA FVNG LL  +IG+K+RAV+QVI+SD G V GKSTD+Q + V G P  PL +++EVIGIAE++  I AE WT+FG++F + N
Subjt:  MDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATATGGATACTTCAAACCCTGCAGTTTTTGTCAATGGCGAGTTATTGAACATGCATATTGGAAGAAAGATTCGAGCAGTTGTTCAAGTTATCCAAAGTGATGGTGGAAT
CGTTACAGGAAAGTCTACTGATGAACAAGATTTGACAGTACATGGCTTGCCCACAGTCCCTCTCATGAGCTTTGTAGAGGTGATTGGTATTGCTGAGAGCAACAAAATCA
TCAATGCTGAAAATTGGACCGACTTTGGAAACACATTTGGTATATACAATAACCCATTCACTCTATACTCAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATT
CAGAAGTTTATTTCTTTAAGAAGCGCAATGAAAAGAGGTAGAGCCTCTACCGTAGAGGTATAA
mRNA sequenceShow/hide mRNA sequence
GATATGGATACTTCAAACCCTGCAGTTTTTGTCAATGGCGAGTTATTGAACATGCATATTGGAAGAAAGATTCGAGCAGTTGTTCAAGTTATCCAAAGTGATGGTGGAAT
CGTTACAGGAAAGTCTACTGATGAACAAGATTTGACAGTACATGGCTTGCCCACAGTCCCTCTCATGAGCTTTGTAGAGGTGATTGGTATTGCTGAGAGCAACAAAATCA
TCAATGCTGAAAATTGGACCGACTTTGGAAACACATTTGGTATATACAATAACCCATTCACTCTATACTCAATCTTACAATCAGCTGTGCCAACTTGCAAATGGGGAATT
CAGAAGTTTATTTCTTTAAGAAGCGCAATGAAAAGAGGTAGAGCCTCTACCGTAGAGGTATAA
Protein sequenceShow/hide protein sequence
DMDTSNPAVFVNGELLNMHIGRKIRAVVQVIQSDGGIVTGKSTDEQDLTVHGLPTVPLMSFVEVIGIAESNKIINAENWTDFGNTFGIYNNPFTLYSILQSAVPTCKWGI
QKFISLRSAMKRGRASTVEV