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Spg009947 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009947
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:4617508..4619723
RNA-Seq ExpressionSpg009947
SyntenySpg009947
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]9.6e-1331.67Show/hide
Query:  MADKLGKEDLEIAIIILWSVWKHRN-AVHQKESSPDSKL---ILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHS----DWIPPPANLWKLNVDA
        + + L  E++  +++I W +W+ RN ++ + E+  + +L   I+ +I S  ++        +SQ+ND     P+   + +     W  PP N WKLN DA
Subjt:  MADKLGKEDLEIAIIILWSVWKHRN-AVHQKESSPDSKL---ILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHS----DWIPPPANLWKLNVDA

Query:  SKSESPSLGGVGWILCDSLGSPICMGYKRIKE----DCLHPNLAI-----------PPILVESDAVGVVNLLNKEIEDLT
        S SE   +GG+GWILCD  G  +  G  +I+E    + L     I            PI +ESD+V V+ L+ KE  DLT
Subjt:  SKSESPSLGGVGWILCDSLGSPICMGYKRIKE----DCLHPNLAI-----------PPILVESDAVGVVNLLNKEIEDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.0e-1529.36Show/hide
Query:  DKLGKEDLEIAIIILWSVWKHRNAVHQKESSPDSKLILRYIESY--SNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSL
        DK G+E+   ++II W +W+ RN    K   P+++ I   I+ Y  ++  RN+    +S   D   +      + + W PP +N WKLN +A+     + 
Subjt:  DKLGKEDLEIAIIILWSVWKHRNAVHQKESSPDSKLILRYIESY--SNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSL

Query:  GGVGWILCDSLGS---------------------PICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFG
        GG+GWIL D  G                       IC G + I+++         PI +ESD++  ++LL+++ +D TE  +L++EI Q+ K + I    
Subjt:  GGVGWILCDSLGS---------------------PICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFG

Query:  FCLRSLNGMAHCLARIAI
           R  N +AH LAR A+
Subjt:  FCLRSLNGMAHCLARIAI

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]6.0e-1534.83Show/hide
Query:  IIILWSVWKHRN-AVHQKESSPDSKLILRYIES--YSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDS
        +++LWS+W +RN  VH     P S+ I  + ES  Y        N++   +N P  V          W PP  +LWKLNVDA+  +S   GG+GWI+ DS
Subjt:  IIILWSVWKHRN-AVHQKESSPDSKLILRYIES--YSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDS

Query:  LGSPICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIA-IFPHPVLTCPCVH
         G  I     +     L     I  I +ESD + VVN++NK    LTE + +V++I +  + + I GF       NG+AH +AR A +F   VL    V 
Subjt:  LGSPICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIA-IFPHPVLTCPCVH

Query:  F
        F
Subjt:  F

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.8e-1832.11Show/hide
Query:  MADKLGKEDLEIAIIILWSVWKHRNAV-----HQKESSPDSKLILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKS
        M DK   EDL++ +I  W +W HRN V     H   S+   +L     ES    E +   +H            K+L +   W PPP ++W LN DAS S
Subjt:  MADKLGKEDLEIAIIILWSVWKHRNAV-----HQKESSPDSKLILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKS

Query:  ESPSLGGVGWILCDSLGSPICMGYKRIKEDCLHPNL-----------------AIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGF
        +S   GG+GWI+  S    I +   R  E C +  L                  + P+ +E+D+  V +LLN++ EDLT++ ++V+EI+ L+    I  F
Subjt:  ESPSLGGVGWILCDSLGSPICMGYKRIKEDCLHPNL-----------------AIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGF

Query:  GFCLRSLNGMAHCLARIA
            R  NG AH LA+ A
Subjt:  GFCLRSLNGMAHCLARIA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.5e-1530.36Show/hide
Query:  DKLGKEDLEIAIIILWSVWKHRN-----AVHQKESSPDSKLIL-RYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSE
        DK G+E+   ++II W +W+ RN      VH +  + D +L++ RYI + + R+ N K   +S   D   +      + + W PP +N WKLN DA+   
Subjt:  DKLGKEDLEIAIIILWSVWKHRN-----AVHQKESSPDSKLIL-RYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSE

Query:  SPSLGGVGWILCDSLGS---------------------PICMGYKRIKEDCLHP--NLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVV
          + GG+GWIL D  G                       IC G + I+++   P       PI +ESD++  ++LL+++ +D TE  +L++EI Q+ + +
Subjt:  SPSLGGVGWILCDSLGS---------------------PICMGYKRIKEDCLHP--NLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVV

Query:  TIAGFGFCLRSLNGMAHCLARIAI
         I       R  N +AH LAR A+
Subjt:  TIAGFGFCLRSLNGMAHCLARIAI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.9e-1529.36Show/hide
Query:  DKLGKEDLEIAIIILWSVWKHRNAVHQKESSPDSKLILRYIESY--SNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSL
        DK G+E+   ++II W +W+ RN    K   P+++ I   I+ Y  ++  RN+    +S   D   +      + + W PP +N WKLN +A+     + 
Subjt:  DKLGKEDLEIAIIILWSVWKHRNAVHQKESSPDSKLILRYIESY--SNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSL

Query:  GGVGWILCDSLGS---------------------PICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFG
        GG+GWIL D  G                       IC G + I+++         PI +ESD++  ++LL+++ +D TE  +L++EI Q+ K + I    
Subjt:  GGVGWILCDSLGS---------------------PICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFG

Query:  FCLRSLNGMAHCLARIAI
           R  N +AH LAR A+
Subjt:  FCLRSLNGMAHCLARIAI

A0A6J1CQG0 uncharacterized protein LOC1110132164.6e-1331.67Show/hide
Query:  MADKLGKEDLEIAIIILWSVWKHRN-AVHQKESSPDSKL---ILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHS----DWIPPPANLWKLNVDA
        + + L  E++  +++I W +W+ RN ++ + E+  + +L   I+ +I S  ++        +SQ+ND     P+   + +     W  PP N WKLN DA
Subjt:  MADKLGKEDLEIAIIILWSVWKHRN-AVHQKESSPDSKL---ILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHS----DWIPPPANLWKLNVDA

Query:  SKSESPSLGGVGWILCDSLGSPICMGYKRIKE----DCLHPNLAI-----------PPILVESDAVGVVNLLNKEIEDLT
        S SE   +GG+GWILCD  G  +  G  +I+E    + L     I            PI +ESD+V V+ L+ KE  DLT
Subjt:  SKSESPSLGGVGWILCDSLGSPICMGYKRIKE----DCLHPNLAI-----------PPILVESDAVGVVNLLNKEIEDLT

A0A6J1D4B6 uncharacterized protein LOC1110171812.9e-1534.83Show/hide
Query:  IIILWSVWKHRN-AVHQKESSPDSKLILRYIES--YSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDS
        +++LWS+W +RN  VH     P S+ I  + ES  Y        N++   +N P  V          W PP  +LWKLNVDA+  +S   GG+GWI+ DS
Subjt:  IIILWSVWKHRN-AVHQKESSPDSKLILRYIES--YSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDS

Query:  LGSPICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIA-IFPHPVLTCPCVH
         G  I     +     L     I  I +ESD + VVN++NK    LTE + +V++I +  + + I GF       NG+AH +AR A +F   VL    V 
Subjt:  LGSPICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIA-IFPHPVLTCPCVH

Query:  F
        F
Subjt:  F

A0A6J1DNV9 uncharacterized protein LOC1110224032.8e-1832.11Show/hide
Query:  MADKLGKEDLEIAIIILWSVWKHRNAV-----HQKESSPDSKLILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKS
        M DK   EDL++ +I  W +W HRN V     H   S+   +L     ES    E +   +H            K+L +   W PPP ++W LN DAS S
Subjt:  MADKLGKEDLEIAIIILWSVWKHRNAV-----HQKESSPDSKLILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKS

Query:  ESPSLGGVGWILCDSLGSPICMGYKRIKEDCLHPNL-----------------AIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGF
        +S   GG+GWI+  S    I +   R  E C +  L                  + P+ +E+D+  V +LLN++ EDLT++ ++V+EI+ L+    I  F
Subjt:  ESPSLGGVGWILCDSLGSPICMGYKRIKEDCLHPNL-----------------AIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGF

Query:  GFCLRSLNGMAHCLARIA
            R  NG AH LA+ A
Subjt:  GFCLRSLNGMAHCLARIA

A0A6J1DSV1 uncharacterized protein LOC1110236081.7e-1530.36Show/hide
Query:  DKLGKEDLEIAIIILWSVWKHRN-----AVHQKESSPDSKLIL-RYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSE
        DK G+E+   ++II W +W+ RN      VH +  + D +L++ RYI + + R+ N K   +S   D   +      + + W PP +N WKLN DA+   
Subjt:  DKLGKEDLEIAIIILWSVWKHRN-----AVHQKESSPDSKLIL-RYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSE

Query:  SPSLGGVGWILCDSLGS---------------------PICMGYKRIKEDCLHP--NLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVV
          + GG+GWIL D  G                       IC G + I+++   P       PI +ESD++  ++LL+++ +D TE  +L++EI Q+ + +
Subjt:  SPSLGGVGWILCDSLGS---------------------PICMGYKRIKEDCLHP--NLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVV

Query:  TIAGFGFCLRSLNGMAHCLARIAI
         I       R  N +AH LAR A+
Subjt:  TIAGFGFCLRSLNGMAHCLARIAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.6e-0527.36Show/hide
Query:  ILWSVWKHRNAVHQKESSPDSKLILRY----IESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDSL
        +LW +WK RN +  K    D+  +LR      E +S R        + +     P   ++L+    W  PP    K N DA+        G+GWIL +  
Subjt:  ILWSVWKHRNAVHQKESSPDSKLILRY----IESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDSL

Query:  GSPICMGYKRI--KEDCLHPNLA-------------IPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIA
        G  + MG + +   ++ L   L                 I+ ESDA  +VNLLN +    T    L ++I QL        F F  R  N +A  +AR +
Subjt:  GSPICMGYKRI--KEDCLHPNLA-------------IPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIA

Query:  I
        I
Subjt:  I


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGCTAGGGAAAGAAGACTTGGAAATAGCTATTATTATCCTTTGGAGTGTTTGGAAGCACAGGAATGCAGTTCATCAAAAGGAATCCAGCCCAGACAGCAA
GCTAATCCTCAGATATATTGAAAGCTATTCTAATCGAGAGAGGAATAGTAAGAATGTGCACCAGTCTCAAGAGAATGATCCTCCCCCCGTTTGCCCGAAGAGCCTCGCGA
GTCACAGTGATTGGATCCCCCCGCCAGCTAACCTCTGGAAACTCAATGTCGATGCTTCCAAAAGTGAATCCCCATCGCTCGGAGGAGTAGGTTGGATCCTCTGTGACTCC
TTAGGATCTCCGATTTGCATGGGGTACAAGAGAATCAAGGAAGACTGCCTTCATCCGAATTTGGCCATTCCTCCCATTTTGGTCGAATCGGATGCTGTTGGCGTAGTCAA
TCTCCTCAACAAAGAAATCGAAGACCTGACGGAATCCGCTTTTCTTGTAGACGAGATCGTCCAGCTGAAGAAAGTAGTTACCATTGCTGGTTTTGGCTTCTGTCTGCGTT
CTCTAAATGGCATGGCTCATTGCTTGGCACGAATCGCCATTTTCCCTCACCCTGTTCTAACATGTCCGTGTGTTCACTTTCACATTCCACAGAACAGTGAAGAAATGACA
CTATTTTGCATCAATGATCATTACGATGTTACAGTTGCTGTTGATGGTAGAATTTCGGTTGGGCATGAGTCGCCTGACATTAAACCCGTTAGGATTCTAAGTCCGAACAT
GGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACAAGCTAGGGAAAGAAGACTTGGAAATAGCTATTATTATCCTTTGGAGTGTTTGGAAGCACAGGAATGCAGTTCATCAAAAGGAATCCAGCCCAGACAGCAA
GCTAATCCTCAGATATATTGAAAGCTATTCTAATCGAGAGAGGAATAGTAAGAATGTGCACCAGTCTCAAGAGAATGATCCTCCCCCCGTTTGCCCGAAGAGCCTCGCGA
GTCACAGTGATTGGATCCCCCCGCCAGCTAACCTCTGGAAACTCAATGTCGATGCTTCCAAAAGTGAATCCCCATCGCTCGGAGGAGTAGGTTGGATCCTCTGTGACTCC
TTAGGATCTCCGATTTGCATGGGGTACAAGAGAATCAAGGAAGACTGCCTTCATCCGAATTTGGCCATTCCTCCCATTTTGGTCGAATCGGATGCTGTTGGCGTAGTCAA
TCTCCTCAACAAAGAAATCGAAGACCTGACGGAATCCGCTTTTCTTGTAGACGAGATCGTCCAGCTGAAGAAAGTAGTTACCATTGCTGGTTTTGGCTTCTGTCTGCGTT
CTCTAAATGGCATGGCTCATTGCTTGGCACGAATCGCCATTTTCCCTCACCCTGTTCTAACATGTCCGTGTGTTCACTTTCACATTCCACAGAACAGTGAAGAAATGACA
CTATTTTGCATCAATGATCATTACGATGTTACAGTTGCTGTTGATGGTAGAATTTCGGTTGGGCATGAGTCGCCTGACATTAAACCCGTTAGGATTCTAAGTCCGAACAT
GGCTTAA
Protein sequenceShow/hide protein sequence
MADKLGKEDLEIAIIILWSVWKHRNAVHQKESSPDSKLILRYIESYSNRERNSKNVHQSQENDPPPVCPKSLASHSDWIPPPANLWKLNVDASKSESPSLGGVGWILCDS
LGSPICMGYKRIKEDCLHPNLAIPPILVESDAVGVVNLLNKEIEDLTESAFLVDEIVQLKKVVTIAGFGFCLRSLNGMAHCLARIAIFPHPVLTCPCVHFHIPQNSEEMT
LFCINDHYDVTVAVDGRISVGHESPDIKPVRILSPNMA