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Spg009974 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009974
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIncreased rDNA silencing protein
Genome locationscaffold7:4626973..4627568
RNA-Seq ExpressionSpg009974
SyntenySpg009974
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601256.1 Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. sororia]9.6e-3166.95Show/hide
Query:  FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIMKNFALIS---E
        F +PS WRRRPSDH RAPRCHGG GDE NQKDIVEANLTVL+ARMEDLRKKE RIPLP   GG+E DNG  Y S  DAKL    D K++KNFALIS   E
Subjt:  FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIMKNFALIS---E

Query:  WLEVMTMVGGAFGLVLVG
        +L    +VG A   V VG
Subjt:  WLEVMTMVGGAFGLVLVG

XP_008446686.1 PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo]2.8e-3867.36Show/hide
Query:  ASARLPSLH-FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLP---AHRGGLEFDNGRSYLSMSDAKLDRG-FDR
        +SA LPS H F  PSS +RRPSDHC APRCH   GDEEN+KDIVEANLTVLR RMEDLRKKE RIP+P     RG  EFD+GR YLS   +KLD G FD 
Subjt:  ASARLPSLH-FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLP---AHRGGLEFDNGRSYLSMSDAKLDRG-FDR

Query:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF
        K +KN ALIS  LEV++ VGGA GLV VGG+LGICLVS +V  F
Subjt:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF

XP_011655810.1 uncharacterized protein LOC105435587 [Cucumis sativus]1.2e-3364.58Show/hide
Query:  MASARLPSLH-FRSPSSWRRRP-SDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGL-EFDNGRSYLSMSDAKLDRG-FDR
        MASA LPS H F +PSS RRRP SDH  APRCHG  GDEEN+KDIVEANLTVLR RMEDLRKKE  IP+   + G+ E D+G  YL     KLD G FD 
Subjt:  MASARLPSLH-FRSPSSWRRRP-SDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGL-EFDNGRSYLSMSDAKLDRG-FDR

Query:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF
        K MKN  LIS  LEV++ VGGA GLV VGG+LGIC VS +V  F
Subjt:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF

XP_022150638.1 uncharacterized protein LOC111018723 [Momordica charantia]3.4e-4472.73Show/hide
Query:  ASARLPSLHFRSPSSWRRRP-SDHCRAPRCHGGFG-DEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIM
        +SA L S HFRSPSSWRRRP +DH RAPRCH G   DEENQKDIVEANLTVLR RMEDLRKKE RI  PA  G +EFDN  SY+S SDAKLDR  +RK++
Subjt:  ASARLPSLHFRSPSSWRRRP-SDHCRAPRCHGGFG-DEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIM

Query:  KNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRFGN
        KNFALISE LEV++M GGA GLVLVGG+LGICLVSLL+    N
Subjt:  KNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRFGN

XP_038893300.1 uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]7.5e-5279.43Show/hide
Query:  MASARLPSLHFRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSD-AKLDRGFDRKIM
        MASAR PS HF SP S RRRPSDH RAPRCHGG GDEENQKDIV+ANLTVLRARMEDLRKKE RIPLPA RGGLEFDNG  YLSMSD AK DR FD KI+
Subjt:  MASARLPSLHFRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSD-AKLDRGFDRKIM

Query:  KNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF
        K FALI+  LEV+T VGGA GLV VGG+LGICLV+LLV  F
Subjt:  KNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF

TrEMBL top hitse value%identityAlignment
A0A0A0KRA6 Uncharacterized protein5.8e-3464.58Show/hide
Query:  MASARLPSLH-FRSPSSWRRRP-SDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGL-EFDNGRSYLSMSDAKLDRG-FDR
        MASA LPS H F +PSS RRRP SDH  APRCHG  GDEEN+KDIVEANLTVLR RMEDLRKKE  IP+   + G+ E D+G  YL     KLD G FD 
Subjt:  MASARLPSLH-FRSPSSWRRRP-SDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGL-EFDNGRSYLSMSDAKLDRG-FDR

Query:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF
        K MKN  LIS  LEV++ VGGA GLV VGG+LGIC VS +V  F
Subjt:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF

A0A1Q3D7T7 Uncharacterized protein1.4e-0638.41Show/hide
Query:  MASARLPSLHFRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIMK
        MAS+ L SL   SP   R +   + +  R H  F DE N  +IV+ANL+ L  R+ ++RKKE        +   +  NG +Y S        G+D    K
Subjt:  MASARLPSLHFRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIMK

Query:  NFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVH
          A++SE +E++  V GA G+V++ G+L ICLVSLLVH
Subjt:  NFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVH

A0A1S3BFP0 uncharacterized protein LOC1034893331.3e-3867.36Show/hide
Query:  ASARLPSLH-FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLP---AHRGGLEFDNGRSYLSMSDAKLDRG-FDR
        +SA LPS H F  PSS +RRPSDHC APRCH   GDEEN+KDIVEANLTVLR RMEDLRKKE RIP+P     RG  EFD+GR YLS   +KLD G FD 
Subjt:  ASARLPSLH-FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLP---AHRGGLEFDNGRSYLSMSDAKLDRG-FDR

Query:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF
        K +KN ALIS  LEV++ VGGA GLV VGG+LGICLVS +V  F
Subjt:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF

A0A5A7SXL4 Uncharacterized protein1.3e-3867.36Show/hide
Query:  ASARLPSLH-FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLP---AHRGGLEFDNGRSYLSMSDAKLDRG-FDR
        +SA LPS H F  PSS +RRPSDHC APRCH   GDEEN+KDIVEANLTVLR RMEDLRKKE RIP+P     RG  EFD+GR YLS   +KLD G FD 
Subjt:  ASARLPSLH-FRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLP---AHRGGLEFDNGRSYLSMSDAKLDRG-FDR

Query:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF
        K +KN ALIS  LEV++ VGGA GLV VGG+LGICLVS +V  F
Subjt:  KIMKNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRF

A0A6J1D9Z1 uncharacterized protein LOC1110187231.6e-4472.73Show/hide
Query:  ASARLPSLHFRSPSSWRRRP-SDHCRAPRCHGGFG-DEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIM
        +SA L S HFRSPSSWRRRP +DH RAPRCH G   DEENQKDIVEANLTVLR RMEDLRKKE RI  PA  G +EFDN  SY+S SDAKLDR  +RK++
Subjt:  ASARLPSLHFRSPSSWRRRP-SDHCRAPRCHGGFG-DEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIM

Query:  KNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRFGN
        KNFALISE LEV++M GGA GLVLVGG+LGICLVSLL+    N
Subjt:  KNFALISEWLEVMTMVGGAFGLVLVGGTLGICLVSLLVHRFGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGCTCGTCTCCCGTCGTTGCACTTCCGCAGTCCGTCTTCTTGGCGGCGAAGGCCATCGGACCACTGCAGAGCTCCGAGATGCCACGGCGGCTTCGGCGATGA
AGAGAACCAGAAGGACATCGTTGAAGCGAACTTGACGGTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCTGCGGATTCCGCTTCCGGCACATCGCGGTGGAC
TCGAATTCGATAATGGCCGGAGCTATCTCTCGATGAGCGATGCGAAGTTGGATCGCGGTTTTGATCGCAAAATTATGAAGAACTTTGCCCTAATTTCAGAGTGGTTGGAG
GTGATGACTATGGTTGGTGGTGCATTTGGGCTCGTTCTTGTTGGTGGAACTTTAGGCATCTGTTTGGTTTCTCTTCTAGTTCATCGTTTTGGTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGCTCGTCTCCCGTCGTTGCACTTCCGCAGTCCGTCTTCTTGGCGGCGAAGGCCATCGGACCACTGCAGAGCTCCGAGATGCCACGGCGGCTTCGGCGATGA
AGAGAACCAGAAGGACATCGTTGAAGCGAACTTGACGGTGTTGAGAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCTGCGGATTCCGCTTCCGGCACATCGCGGTGGAC
TCGAATTCGATAATGGCCGGAGCTATCTCTCGATGAGCGATGCGAAGTTGGATCGCGGTTTTGATCGCAAAATTATGAAGAACTTTGCCCTAATTTCAGAGTGGTTGGAG
GTGATGACTATGGTTGGTGGTGCATTTGGGCTCGTTCTTGTTGGTGGAACTTTAGGCATCTGTTTGGTTTCTCTTCTAGTTCATCGTTTTGGTAATTGA
Protein sequenceShow/hide protein sequence
MASARLPSLHFRSPSSWRRRPSDHCRAPRCHGGFGDEENQKDIVEANLTVLRARMEDLRKKELRIPLPAHRGGLEFDNGRSYLSMSDAKLDRGFDRKIMKNFALISEWLE
VMTMVGGAFGLVLVGGTLGICLVSLLVHRFGN