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Spg009997 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009997
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationscaffold7:5026569..5037346
RNA-Seq ExpressionSpg009997
SyntenySpg009997
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]3.7e-4376.69Show/hide
Query:  IFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGSAQAHHR
        +F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGSAQAHHR
Subjt:  IFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGSAQAHHR

Query:  QGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        QGR  NAGN YENNMGLL A+VLAAIAHL+ VF
Subjt:  QGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]8.9e-4575.54Show/hide
Query:  RREMGLIFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        AQAHHRQGR  NAGN YENNMGLL A+VLAAI HL+ VF
Subjt:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

XP_022987717.1 uncharacterized protein LOC111485159 [Cucurbita maxima]1.2e-4474.82Show/hide
Query:  RREMGLIFMLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSA  Q+ILPTE NYHQKT  EKH +DGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFMLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        AQAHHRQGRP NAGN YENNMGLL A+VLAAIAHL+ VF
Subjt:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]3.1e-4576.26Show/hide
Query:  RREMGLIFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        AQAHHRQGR  NAGN YENNMGLL A+VLAAIAHL+ VF
Subjt:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]4.7e-4677.14Show/hide
Query:  RREMGLIFMLFCSTMAISSAL--QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGS--AAGGENGGGSRPHTGGGGTAVIPIYAAG
        RR + LI +L CSTMAISSA   Q+I PTESNY QKT TEK  KDG+TNQ+ RRYS + ITVSNGIG GS  A GGENGGGSRPH  GGGTAVIP+YAAG
Subjt:  RREMGLIFMLFCSTMAISSAL--QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGS--AAGGENGGGSRPHTGGGGTAVIPIYAAG

Query:  SAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        SAQAHHRQGRPHNAGNR+ENN GLL AAVLAAIAHLY VF
Subjt:  SAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein7.1e-4069.08Show/hide
Query:  RREMGLIFMLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSN------------GIGHGSAAGGENGGGSRPHTGG
        RR + LIF+LFCST+AISSA   Q+I P  TESNY QKT T+KH K GVTNQ+ RRYS S ITVSN            G G  +AAGG   GGSRP T G
Subjt:  RREMGLIFMLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSN------------GIGHGSAAGGENGGGSRPHTGG

Query:  GGTAVIPIYAAGSAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        GGTAVIP+YAAGSAQAHHRQGR HNAGN YENNMGLL AAVLAAIAHL RVF
Subjt:  GGTAVIPIYAAGSAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

A0A1S3BFU8 uncharacterized protein LOC1034893824.5e-4272.79Show/hide
Query:  MERREMGLIFMLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV
        MERR + LIF+LFCST+AISSA   Q+I P  TESNY QKT T K  K GVTNQ+ RRYS S ITVSN I     G  +A GGENGGGSRPHT GGGTAV
Subjt:  MERREMGLIFMLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV

Query:  IPIYAAGSAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        IP+YAAGSAQA HRQGRPHNAGN YENN GLL AAVLAAIAHL RV+
Subjt:  IPIYAAGSAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

A0A5A7SUI0 Uncharacterized protein4.5e-4272.79Show/hide
Query:  MERREMGLIFMLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV
        MERR + LIF+LFCST+AISSA   Q+I P  TESNY QKT T K  K GVTNQ+ RRYS S ITVSN I     G  +A GGENGGGSRPHT GGGTAV
Subjt:  MERREMGLIFMLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV

Query:  IPIYAAGSAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        IP+YAAGSAQA HRQGRPHNAGN YENN GLL AAVLAAIAHL RV+
Subjt:  IPIYAAGSAQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like4.3e-4575.54Show/hide
Query:  RREMGLIFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFMLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        AQAHHRQGR  NAGN YENNMGLL A+VLAAI HL+ VF
Subjt:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

A0A6J1JB47 uncharacterized protein LOC1114851595.6e-4574.82Show/hide
Query:  RREMGLIFMLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSA  Q+ILPTE NYHQKT  EKH +DGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFMLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF
        AQAHHRQGRP NAGN YENNMGLL A+VLAAIAHL+ VF
Subjt:  AQAHHRQGRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCGAAAATGGAAAGAAGAGAGATGGGATTGATTTTCATGCTGTTTTGTTCTACCATGGCTATTTCATCTGCTCTGCAAGAAATCTTGCCAACAGAGTCTAATTA
CCACCAGAAAACTAAGACAGAAAAACATGACAAAGATGGGGTTACTAACCAGGTTGGCAGAAGATACAGTGTAAGTACGATCACCGTTTCTAATGGGATCGGTCATGGAA
GCGCAGCCGGCGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGAGGTACCGCCGTAATCCCAATTTATGCAGCCGGTTCGGCACAAGCACATCACCGCCAG
GGTCGACCCCACAATGCAGGAAATCGCTATGAGAACAACATGGGGCTTCTGGCAGCTGCAGTTTTGGCCGCCATAGCACATCTGTATAGAGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCGAAAATGGAAAGAAGAGAGATGGGATTGATTTTCATGCTGTTTTGTTCTACCATGGCTATTTCATCTGCTCTGCAAGAAATCTTGCCAACAGAGTCTAATTA
CCACCAGAAAACTAAGACAGAAAAACATGACAAAGATGGGGTTACTAACCAGGTTGGCAGAAGATACAGTGTAAGTACGATCACCGTTTCTAATGGGATCGGTCATGGAA
GCGCAGCCGGCGGAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGAGGTACCGCCGTAATCCCAATTTATGCAGCCGGTTCGGCACAAGCACATCACCGCCAG
GGTCGACCCCACAATGCAGGAAATCGCTATGAGAACAACATGGGGCTTCTGGCAGCTGCAGTTTTGGCCGCCATAGCACATCTGTATAGAGTTTTCTAA
Protein sequenceShow/hide protein sequence
MRAKMERREMGLIFMLFCSTMAISSALQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAAGGENGGGSRPHTGGGGTAVIPIYAAGSAQAHHRQ
GRPHNAGNRYENNMGLLAAAVLAAIAHLYRVF