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Spg010001 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010001
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold7:5590976..5593222
RNA-Seq ExpressionSpg010001
SyntenySpg010001
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.8e-0626.83Show/hide
Query:  MNFDAAWNEKDGRGDLGWIVCDSYGSLICFRMQQIAKNWTIKTLEASVILEELKHIADTCNRLNIPLEVETVALEVVNVLNGESEDFSNLKIFTDEIGVF
        +N DA+W++   RG +GWI+    G ++    + +     +K LEAS ILE L+++ +    +  PL +ET + EV ++LN + ED +      +EI   
Subjt:  MNFDAAWNEKDGRGDLGWIVCDSYGSLICFRMQQIAKNWTIKTLEASVILEELKHIADTCNRLNIPLEVETVALEVVNVLNGESEDFSNLKIFTDEIGVF

Query:  AAHAHSMKFHHCNHLVNTDAHCVARRVAVHLPSSVVGSGSNTSSSREIERVFWTPNIPLWFSLL
              + F       N  AH +A+R +V                   E + W    P W S+L
Subjt:  AAHAHSMKFHHCNHLVNTDAHCVARRVAVHLPSSVVGSGSNTSSSREIERVFWTPNIPLWFSLL
TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224032.8e-0626.83Show/hide
Query:  MNFDAAWNEKDGRGDLGWIVCDSYGSLICFRMQQIAKNWTIKTLEASVILEELKHIADTCNRLNIPLEVETVALEVVNVLNGESEDFSNLKIFTDEIGVF
        +N DA+W++   RG +GWI+    G ++    + +     +K LEAS ILE L+++ +    +  PL +ET + EV ++LN + ED +      +EI   
Subjt:  MNFDAAWNEKDGRGDLGWIVCDSYGSLICFRMQQIAKNWTIKTLEASVILEELKHIADTCNRLNIPLEVETVALEVVNVLNGESEDFSNLKIFTDEIGVF

Query:  AAHAHSMKFHHCNHLVNTDAHCVARRVAVHLPSSVVGSGSNTSSSREIERVFWTPNIPLWFSLL
              + F       N  AH +A+R +V                   E + W    P W S+L
Subjt:  AAHAHSMKFHHCNHLVNTDAHCVARRVAVHLPSSVVGSGSNTSSSREIERVFWTPNIPLWFSLL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTCGACGCTGCCTGGAATGAGAAAGATGGTCGTGGAGACCTCGGATGGATTGTGTGTGACTCATACGGATCCCTGATCTGTTTCAGAATGCAACAAATTGCCAA
GAATTGGACAATTAAAACATTGGAAGCGAGTGTTATTTTAGAAGAACTCAAGCATATTGCCGATACCTGCAATCGGCTCAACATTCCTCTGGAAGTCGAAACAGTCGCCT
TAGAAGTCGTTAATGTCTTGAACGGGGAATCAGAAGACTTCTCTAACTTGAAGATCTTCACCGATGAAATTGGTGTTTTCGCCGCTCACGCGCACTCCATGAAGTTTCAC
CATTGTAATCACCTTGTGAACACAGATGCACATTGTGTTGCGAGGAGAGTTGCTGTCCATCTTCCTTCTTCTGTGGTAGGCTCTGGCAGCAACACTTCTTCTTCGCGGGA
AATAGAGCGTGTTTTTTGGACTCCCAATATCCCTCTTTGGTTTTCCCTCTTATTAATGAGGGTAAATTTGGACCACTCCGACGTACTAGGAGCTGACGAGGACAACTGGA
CAGAAATAGGGCTGGGAGATGGACCCCAGAGGCGAAACCGGCGAGTGGAACGAGCCAAGACCGAAGGGGTTGGGCTTTTGGCCCGACCCCATGGTCGGCCTCAGCCACCT
CGGCCCGCTTGCGCGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTCGACGCTGCCTGGAATGAGAAAGATGGTCGTGGAGACCTCGGATGGATTGTGTGTGACTCATACGGATCCCTGATCTGTTTCAGAATGCAACAAATTGCCAA
GAATTGGACAATTAAAACATTGGAAGCGAGTGTTATTTTAGAAGAACTCAAGCATATTGCCGATACCTGCAATCGGCTCAACATTCCTCTGGAAGTCGAAACAGTCGCCT
TAGAAGTCGTTAATGTCTTGAACGGGGAATCAGAAGACTTCTCTAACTTGAAGATCTTCACCGATGAAATTGGTGTTTTCGCCGCTCACGCGCACTCCATGAAGTTTCAC
CATTGTAATCACCTTGTGAACACAGATGCACATTGTGTTGCGAGGAGAGTTGCTGTCCATCTTCCTTCTTCTGTGGTAGGCTCTGGCAGCAACACTTCTTCTTCGCGGGA
AATAGAGCGTGTTTTTTGGACTCCCAATATCCCTCTTTGGTTTTCCCTCTTATTAATGAGGGTAAATTTGGACCACTCCGACGTACTAGGAGCTGACGAGGACAACTGGA
CAGAAATAGGGCTGGGAGATGGACCCCAGAGGCGAAACCGGCGAGTGGAACGAGCCAAGACCGAAGGGGTTGGGCTTTTGGCCCGACCCCATGGTCGGCCTCAGCCACCT
CGGCCCGCTTGCGCGGGCTAA
Protein sequenceShow/hide protein sequence
MNFDAAWNEKDGRGDLGWIVCDSYGSLICFRMQQIAKNWTIKTLEASVILEELKHIADTCNRLNIPLEVETVALEVVNVLNGESEDFSNLKIFTDEIGVFAAHAHSMKFH
HCNHLVNTDAHCVARRVAVHLPSSVVGSGSNTSSSREIERVFWTPNIPLWFSLLLMRVNLDHSDVLGADEDNWTEIGLGDGPQRRNRRVERAKTEGVGLLARPHGRPQPP
RPACAG