CuGenDBv2

Gene ID	Spg010030
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	HMA domain-containing protein
Genome location	scaffold7:4019868..4023391
RNA-Seq Expression	Spg010030
Synteny	Spg010030
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036163 - Heavy metal-associated domain superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7013033.1 hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-20

81.08

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQIP+      SRVSTIKRLLGSSFR
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

XP_022150612.1 uncharacterized protein LOC111018707 [Momordica charantia]

1.2e-25

86.49

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIVLTADIRC ECQ KLANILSK+NDTESVVVNLLEKKV+LTRRLQ+PSTC++S S+V+TIKRLLGSSFR
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

XP_022968296.1 uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima]

1.0e-21

83.78

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SRVST+KRLLGSSFR
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

XP_023542320.1 uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo]

1.5e-20

81.08

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQIP+      SRVSTIKRLLGSSFR
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

XP_038892707.1 uncharacterized protein LOC120081691 [Benincasa hispida]

1.9e-20

82.43

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIVLTADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTRRLQI       PSR+STIKRLLGS  R
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT62 Uncharacterized protein

1.1e-18

78.38

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIVLTADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTRR QI       PSRVSTI+RL  S  R
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

A0A6J1DB71 uncharacterized protein LOC111018707

5.7e-26

86.49

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIVLTADIRC ECQ KLANILSK+NDTESVVVNLLEKKV+LTRRLQ+PSTC++S S+V+TIKRLLGSSFR
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

A0A6J1G188 uncharacterized protein LOC111449743 isoform X3

2.3e-19

79.45

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSF
        PLVQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQI +      SRVSTIKRLLGSSF
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSF

A0A6J1HUG9 uncharacterized protein LOC111467567 isoform X3

5.0e-22

83.78

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        PLVQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SRVST+KRLLGSSFR
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

A0A6J1HZ87 uncharacterized protein LOC111467567 isoform X1

9.3e-21

83.33

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Query:  VQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
        VQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SRVST+KRLLGSSFR
Subjt:  VQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G68585.1 unknown protein

5.1e-11

49.33

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Query:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLT------RRLQIPSTCNDSPSRVSTIKRLL
        PL+QEIVL+ADIRC++CQ+K+A+I+++M +T S++V++LEKKV LT      RR+   S       ++STIKRL+
Subjt:  PLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLT------RRLQIPSTCNDSPSRVSTIKRLL

Sequences

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CDS sequence

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ATGATAAACAGAGGCGCTGAGGCTCATATCTCTTTGGGTGGAAATAGTCGATGGTATCCTCCGATTGAAGATTTCTGGAAGATGAATTCTGATGCTGCATGCTTCGAAGA
TCCCTTGATGACAAGTATTGAGATGATCTATAGAGATTTTGAGGGAAGATTATGGTTGCTGCTTCGTGTTATGGATATTAAGTTGGAGGCCCATTTGGCCGAATTATGGA
CCATTCTTGAATGTATCAGACTGGTTGTTTCTTTGGGTTGTTCCAAGCTTATTGTGGAATCTGATTGCCAAATTGCTATCAAGATTGTCCATGAAATTGCAAGATATGGG
AAATCTGTAAATAATCGTGAGGTTTGGGTTTCAAATTTTCCAAACTGGATGTTCGTCCACTGTGCAGTTGAGCTCGCGATTTCTCCTTCTTTTCCGTTTTTGGTTAGCCA
GGGCGATTCCTTTCGCGGGGATTTGGGTGTTTATTTTGGGCCCTTGGTTCAGGAAATTGTGTTGACGGCTGATATTCGTTGTGCTGAATGCCAGAAGAAACTGGCGAATA
TTCTGTCCAAAATGAACGATACAGAGTCTGTGGTGGTGAATTTGTTGGAGAAGAAAGTGGTATTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGT
AGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAA

mRNA sequence

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Protein sequence

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MINRGAEAHISLGGNSRWYPPIEDFWKMNSDAACFEDPLMTSIEMIYRDFEGRLWLLLRVMDIKLEAHLAELWTILECIRLVVSLGCSKLIVESDCQIAIKIVHEIARYG
KSVNNREVWVSNFPNWMFVHCAVELAISPSFPFLVSQGDSFRGDLGVYFGPLVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPS
RVSTIKRLLGSSFR

Spg010030 (gene) of Sponge gourd (cylindrica) v1 genome