CuGenDBv2

Gene ID	Spg010053
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	THO complex subunit 1
Genome location	scaffold7:6808704..6810859
RNA-Seq Expression	Spg010053
Synteny	Spg010053
Gene Ontology terms	GO:0006406 - mRNA export from nucleus (biological process) GO:0032784 - regulation of DNA-templated transcription, elongation (biological process) GO:0000445 - THO complex part of transcription export complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KGN51016.1 hypothetical protein Csa_007827 [Cucumis sativus]

7.1e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        +EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

XP_008460496.1 PREDICTED: THO complex subunit 1 [Cucumis melo]

1.9e-18

96.3

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        +EEFRKAILQ GPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

XP_011655214.1 THO complex subunit 1 [Cucumis sativus]

7.1e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        +EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

XP_038892203.1 THO complex subunit 1 isoform X1 [Benincasa hispida]

7.1e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        MEEFRKAILQ+G PENFALQTVQDVI+PQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

XP_038892204.1 THO complex subunit 1 isoform X2 [Benincasa hispida]

7.1e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        MEEFRKAILQ+G PENFALQTVQDVI+PQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTL0 Uncharacterized protein

3.4e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        +EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

A0A1S3CC63 THO complex subunit 1

9.1e-19

96.3

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        +EEFRKAILQ GPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

A0A6J1CC37 THO complex subunit 1

5.9e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        MEEFRKAILQ+ PPENFALQTVQ+VIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

A0A6J1G1S6 THO complex subunit 1

7.7e-18

94.44

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        MEEFRKAILQ+GPPENFALQTVQDVI+PQK TKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

A0A6J1HPE8 THO complex subunit 1

3.8e-17

92.59

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        MEEFRKAILQ+ PPENFALQTVQDVI+PQK TKLAQDENQLLENILRRLLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

SwissProt top hits

e value

%identity

Alignment

Q93VM9 THO complex subunit 1

5.5e-13

72.22

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        M+ FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

Arabidopsis top hits

e value

%identity

Alignment

AT5G09860.1 nuclear matrix protein-related

3.9e-14

72.22

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        M+ FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

AT5G09860.2 nuclear matrix protein-related

3.9e-14

72.22

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Query:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        M+ FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Subjt:  MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

Sequences

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CDS sequence

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ATGGAAGAGTTTCGGAAGGCCATATTACAATCGGGGCCACCAGAAAATTTTGCTCTGCAGACAGTTCAAGATGTTATCAGACCTCAGAAGCACACAAAATTGGCGCAAGA
TGAAAATCAATTGCTGGAAAATATTCTACGGCGATTACTTCAAGAATTAGTGGGAGATGATTTTGCTGAAGTTTTCCTCCTTAGATTTATAAGCTTGATTTATGACGAAG
CTCAGGATTTGTATTGTCTCTTGGTTCTAAATGGAATTGTCTTTGTCCATTCCAACATTGATAGAATCTGGTCCCTAAAATCCTTGGGTCATGGATGCCTTCAATTGTGA

mRNA sequence

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Protein sequence

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MEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELVGDDFAEVFLLRFISLIYDEAQDLYCLLVLNGIVFVHSNIDRIWSLKSLGHGCLQL

Spg010053 (gene) of Sponge gourd (cylindrica) v1 genome