; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010071 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010071
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 25
Genome locationscaffold7:3908996..3917689
RNA-Seq ExpressionSpg010071
SyntenySpg010071
Gene Ontology termsNA
InterPro domainsIPR045105 - Med25/PTOV1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYI46069.1 hypothetical protein E1A91_D13G080900v1 [Gossypium mustelinum]5.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
TYI46072.1 hypothetical protein E1A91_D13G080900v1 [Gossypium mustelinum]5.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
TYI46076.1 hypothetical protein E1A91_D13G080900v1 [Gossypium mustelinum]5.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
TYJ00001.1 hypothetical protein E1A91_A13G057400v1 [Gossypium mustelinum]5.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
TYJ00003.1 hypothetical protein E1A91_A13G057400v1 [Gossypium mustelinum]5.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
TrEMBL top hitse value%identityAlignment
A0A5D2RZE6 Mediator of RNA polymerase II transcription subunit 252.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
A0A5D2RZE8 Mediator of RNA polymerase II transcription subunit 252.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
A0A5D2S001 Mediator of RNA polymerase II transcription subunit 252.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
A0A5D2WE53 Mediator of RNA polymerase II transcription subunit 252.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
A0A5D2WEG9 Mediator of RNA polymerase II transcription subunit 252.7e-3862.76Show/hide
Query:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV
        G  N++   MPLSQ T+ ALQ AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS+ QYVGKADFLVFRA+NQHGFLGQLQEKKL            
Subjt:  GKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLV

Query:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
                          CAVIQLP QTLLLSVSD+ACRLIGML+
Subjt:  GYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
SwissProt top hitse value%identityAlignment
A0A3Q7JC00 Mediator of RNA polymerase II transcription subunit 253.6e-3554.22Show/hide
Query:  NNATTYMPLS-QHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QYVGKADFLVFRALNQHGF
        N+ +  MPLS Q T+GAL  AQSKYVK+WEGNLSGQR+GQPV I+R+EGY  ASAS++                       QYVGKADFLVFRA+NQHGF
Subjt:  NNATTYMPLS-QHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QYVGKADFLVFRALNQHGF

Query:  LGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
        L QLQEKKL                              CAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  LGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
Q7XYY2 Mediator of RNA polymerase II transcription subunit 253.2e-3650.27Show/hide
Query:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QY
        T  V   A   + + G  N++   M LSQ ++GA+Q +QSKYVK+WEGNLSGQR+GQPVLI+R+EGY  ASASD+                       QY
Subjt:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QY

Query:  VGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
        VGKADFLVFRA++QHGFLGQLQ+KKL                              CAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  VGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
Arabidopsis top hitse value%identityAlignment
AT1G25540.1 phytochrome and flowering time regulatory protein (PFT1)2.3e-3750.27Show/hide
Query:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QY
        T  V   A   + + G  N++   M LSQ ++GA+Q +QSKYVK+WEGNLSGQR+GQPVLI+R+EGY  ASASD+                       QY
Subjt:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QY

Query:  VGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
        VGKADFLVFRA++QHGFLGQLQ+KKL                              CAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  VGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
AT1G25540.2 phytochrome and flowering time regulatory protein (PFT1)2.3e-3750.27Show/hide
Query:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QY
        T  V   A   + + G  N++   M LSQ ++GA+Q +QSKYVK+WEGNLSGQR+GQPVLI+R+EGY  ASASD+                       QY
Subjt:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDN-----------------------QY

Query:  VGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY
        VGKADFLVFRA++QHGFLGQLQ+KKL                              CAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  VGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVEPLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAACTCAAATCATCAGACAAAGAGGCAGTTAAAGTTGAAGTGGAGGAGTCAGGGCTCCAATGTGATCAGATACAGATGAATTGCAGTCTAGTCGGGAAGTTTGA
ATCAACAAAATTGGTGAACATAGGTGCTTTCAATTCCATCAATTTCATAGCAAGGATGGAAAAACTCAAATCATCAGGCAAAGAGGCAGTTAAAGTTGAAATGGAGGAGT
CAGGCCTCCAATCTGATCAGATACAGATGAATTGCAGTCTAGTTGGGAAGGATGAATCAACAAAATCGGTGAACATAGGTGCTTTCAAGAACGTGACGAGAAAGGGAAAG
CGCAACAATGCAACAACTTACATGCCATTATCGCAGCATACAACAGGTGCTTTGCAACCAGCACAATCCAAATACGTGAAACTTTGGGAGGGAAATCTATCTGGGCAGAG
ACGAGGCCAGCCTGTTTTGATTAGTAGAATGGAAGGTTACGGGAGGGCTTCAGCTTCTGATAATCAATATGTTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTTTGAATC
AGCACGGGTTTCTTGGCCAGCTTCAAGAAAAGAAACTTGGGCTGGGTGGAGAAGATTCTTTGCTTTGGCTTGTGGGTTATAAGGGGAACAATGTGGTTTCTAATGTTGAG
CCGCTTGTTCTGTTTCAGTGTGCAGTCATTCAGTTGCCATCCCAGACTTTACTACTATCTGTTTCTGATAGAGCTTGTCGCTTGATTGGGATGCTTTATCTTGAGGGAAA
GTGCAGCAATGCATTAACTAACGTGCCATTATCACGGCATACAGCAGGCGCTTTGCAATCAACACAATCCAAATACGTGAATATTTGGGAGTGTGTAAATCAAGATATGG
AATCTCCCTCACATCAGAAGTCTCCCACTATGCGAAGACTACATCATATTGCGTTTTATGATCACTTGGTCTGCAAGGGTTCAAATGTGCTTGTGCTCGATTCTTCATTA
CTCAGTAATATTTTTTCTGAAGACGTGGTTGATCTTTTTGTGTTAGGAATAAGGGAAATCTATCTGGGCAAAGACAAGGCCAGCCTGTTTTTATTACCAGAATGGAAGTA
TGCTTCTGATCGTCTGCTCGATAATTTTAGTAAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAACTCAAATCATCAGACAAAGAGGCAGTTAAAGTTGAAGTGGAGGAGTCAGGGCTCCAATGTGATCAGATACAGATGAATTGCAGTCTAGTCGGGAAGTTTGA
ATCAACAAAATTGGTGAACATAGGTGCTTTCAATTCCATCAATTTCATAGCAAGGATGGAAAAACTCAAATCATCAGGCAAAGAGGCAGTTAAAGTTGAAATGGAGGAGT
CAGGCCTCCAATCTGATCAGATACAGATGAATTGCAGTCTAGTTGGGAAGGATGAATCAACAAAATCGGTGAACATAGGTGCTTTCAAGAACGTGACGAGAAAGGGAAAG
CGCAACAATGCAACAACTTACATGCCATTATCGCAGCATACAACAGGTGCTTTGCAACCAGCACAATCCAAATACGTGAAACTTTGGGAGGGAAATCTATCTGGGCAGAG
ACGAGGCCAGCCTGTTTTGATTAGTAGAATGGAAGGTTACGGGAGGGCTTCAGCTTCTGATAATCAATATGTTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTTTGAATC
AGCACGGGTTTCTTGGCCAGCTTCAAGAAAAGAAACTTGGGCTGGGTGGAGAAGATTCTTTGCTTTGGCTTGTGGGTTATAAGGGGAACAATGTGGTTTCTAATGTTGAG
CCGCTTGTTCTGTTTCAGTGTGCAGTCATTCAGTTGCCATCCCAGACTTTACTACTATCTGTTTCTGATAGAGCTTGTCGCTTGATTGGGATGCTTTATCTTGAGGGAAA
GTGCAGCAATGCATTAACTAACGTGCCATTATCACGGCATACAGCAGGCGCTTTGCAATCAACACAATCCAAATACGTGAATATTTGGGAGTGTGTAAATCAAGATATGG
AATCTCCCTCACATCAGAAGTCTCCCACTATGCGAAGACTACATCATATTGCGTTTTATGATCACTTGGTCTGCAAGGGTTCAAATGTGCTTGTGCTCGATTCTTCATTA
CTCAGTAATATTTTTTCTGAAGACGTGGTTGATCTTTTTGTGTTAGGAATAAGGGAAATCTATCTGGGCAAAGACAAGGCCAGCCTGTTTTTATTACCAGAATGGAAGTA
TGCTTCTGATCGTCTGCTCGATAATTTTAGTAAAAATTGA
Protein sequenceShow/hide protein sequence
MEKLKSSDKEAVKVEVEESGLQCDQIQMNCSLVGKFESTKLVNIGAFNSINFIARMEKLKSSGKEAVKVEMEESGLQSDQIQMNCSLVGKDESTKSVNIGAFKNVTRKGK
RNNATTYMPLSQHTTGALQPAQSKYVKLWEGNLSGQRRGQPVLISRMEGYGRASASDNQYVGKADFLVFRALNQHGFLGQLQEKKLGLGGEDSLLWLVGYKGNNVVSNVE
PLVLFQCAVIQLPSQTLLLSVSDRACRLIGMLYLEGKCSNALTNVPLSRHTAGALQSTQSKYVNIWECVNQDMESPSHQKSPTMRRLHHIAFYDHLVCKGSNVLVLDSSL
LSNIFSEDVVDLFVLGIREIYLGKDKASLFLLPEWKYASDRLLDNFSKN