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Spg010085 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010085
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationscaffold7:6713957..6714400
RNA-Seq ExpressionSpg010085
SyntenySpg010085
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.7e-4977.78Show/hide
Query:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA
        MDL   K+  RR++KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI AAA    +NLQS  SASAFLDYQLLGD+DL+D DHRLVA
Subjt:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA

Query:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL
        GK+ETAAYQSSVAP EDLV++NFDASFAEMF  FLH+ SSTQ+EMP G SALL
Subjt:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL

XP_022139181.1 uncharacterized protein LOC111010149 [Momordica charantia]4.6e-4470.78Show/hide
Query:  MDLIKRQP---RRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQ-SSASAFLDYQLL--GDEDLSDRD--HR
        MD+I R+    RR+KKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI AAA    ++LQ SS++AFLD+QLL   D+D  DRD  HR
Subjt:  MDLIKRQP---RRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQ-SSASAFLDYQLL--GDEDLSDRD--HR

Query:  LVAGKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHESSTQSEMPAGLSAL
        LV+G +E ++YQSS+AP +DL+LQNFDA+FA+MFHGFLH+SSTQ++MP GL+ L
Subjt:  LVAGKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHESSTQSEMPAGLSAL

XP_022945563.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]4.7e-4977.78Show/hide
Query:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA
        MDL   K+  RR++KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI AAA    +NLQS  SASAFLDYQLLGD+DL+D DHRLVA
Subjt:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA

Query:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL
        GK+ETAAYQSSVAP EDLV++NFDASFAEMF  FLH+ SSTQ+EMP G SALL
Subjt:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL

XP_022966872.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]9.5e-5079.08Show/hide
Query:  MDLIKRQ--PRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA
        MDL  +Q   RR++KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI AAA    +NLQS  SASAFLDYQLLGD+DL+D DHRLVA
Subjt:  MDLIKRQ--PRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA

Query:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL
        GK+ETAAYQSSVAP EDLV+QNFDASFAEMF  FLHE SSTQ+EMP G SALL
Subjt:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]9.5e-5079.08Show/hide
Query:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA
        MDL   K+  RR++KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI AAA    +NLQS  SASAFLDYQLLGD+DL+D DHRLVA
Subjt:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA

Query:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL
        GK+ETAAYQSSVAP EDLV+QNFDASFAEMF  FLHE SSTQ+EMP G SALL
Subjt:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL

TrEMBL top hitse value%identityAlignment
A0A6J1CBX0 uncharacterized protein LOC1110101492.2e-4470.78Show/hide
Query:  MDLIKRQP---RRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQ-SSASAFLDYQLL--GDEDLSDRD--HR
        MD+I R+    RR+KKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI AAA    ++LQ SS++AFLD+QLL   D+D  DRD  HR
Subjt:  MDLIKRQP---RRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQ-SSASAFLDYQLL--GDEDLSDRD--HR

Query:  LVAGKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHESSTQSEMPAGLSAL
        LV+G +E ++YQSS+AP +DL+LQNFDA+FA+MFHGFLH+SSTQ++MP GL+ L
Subjt:  LVAGKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHESSTQSEMPAGLSAL

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like2.3e-4977.78Show/hide
Query:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA
        MDL   K+  RR++KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI AAA    +NLQS  SASAFLDYQLLGD+DL+D DHRLVA
Subjt:  MDLI--KRQPRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA

Query:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL
        GK+ETAAYQSSVAP EDLV++NFDASFAEMF  FLH+ SSTQ+EMP G SALL
Subjt:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like5.1e-4177.86Show/hide
Query:  MDLI-KRQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQSSASAFLDYQLLGDEDLSDRDHRLVAGKME
        MD+I K+ P+RTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI A     + N QS  SAFLDYQ+LGD++L DRDHRLVAGK+E
Subjt:  MDLI-KRQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQSSASAFLDYQLLGDEDLSDRDHRLVAGKME

Query:  TAAYQSSVAPAE-DLVLQNFDASFAEMFHGF
        TAAYQS VAP E D VLQNFDASF EM HGF
Subjt:  TAAYQSSVAPAE-DLVLQNFDASFAEMFHGF

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like4.6e-5079.08Show/hide
Query:  MDLIKRQ--PRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA
        MDL  +Q   RR++KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFMELI AAA    +NLQS  SASAFLDYQLLGD+DL+D DHRLVA
Subjt:  MDLIKRQ--PRRTKKS-AADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQS--SASAFLDYQLLGDEDLSDRDHRLVA

Query:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL
        GK+ETAAYQSSVAP EDLV+QNFDASFAEMF  FLHE SSTQ+EMP G SALL
Subjt:  GKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHE-SSTQSEMPAGLSALL

A0A6J1JD32 uncharacterized protein LOC1114839426.7e-4177.1Show/hide
Query:  MDLI-KRQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQSSASAFLDYQLLGDEDLSDRDHRLVAGKME
        MD+I K+QP+RTKKSAA+FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE F+ELI   AG RN      +SAFLDYQ+LGD++L +RDHRLVAGK+E
Subjt:  MDLI-KRQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQSSASAFLDYQLLGDEDLSDRDHRLVAGKME

Query:  TAAYQSSVA-PAEDLVLQNFDASFAEMFHGF
        TAAYQS VA PA+DLVLQNFDASF EM  GF
Subjt:  TAAYQSSVA-PAEDLVLQNFDASFAEMFHGF

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic4.8e-0453.49Show/hide
Query:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +Q R++  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Q9LDH1 Sigma factor binding protein 1, chloroplastic7.4e-0555.81Show/hide
Query:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +Q ++T  +    KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.4e-0553.49Show/hide
Query:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +Q R++  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 15.3e-0655.81Show/hide
Query:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        +Q ++T  +    KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Subjt:  RQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGATCAAGAGACAGCCGAGGAGAACCAAGAAATCGGCCGCCGATTTCAAAGTCGTGTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCCG
ATCTCTCGTCCAGAAACTCACCGGTCAGGACTCCGACGCCGAGAGGTTCATGGAACTCATCGGCGCCGCCGCCGGTGGTCGGAATGATAATCTCCAATCGTCGGCGTCGG
CGTTCCTCGATTACCAACTCCTTGGCGACGAAGATTTAAGCGATCGCGATCATCGTCTTGTGGCGGGAAAGATGGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGGCG
GAGGATTTGGTTTTGCAGAACTTCGATGCGAGTTTTGCGGAAATGTTCCATGGCTTTTTGCATGAATCTTCTACACAGTCTGAGATGCCTGCAGGTTTAAGTGCACTACT
GTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGATCAAGAGACAGCCGAGGAGAACCAAGAAATCGGCCGCCGATTTCAAAGTCGTGTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCCG
ATCTCTCGTCCAGAAACTCACCGGTCAGGACTCCGACGCCGAGAGGTTCATGGAACTCATCGGCGCCGCCGCCGGTGGTCGGAATGATAATCTCCAATCGTCGGCGTCGG
CGTTCCTCGATTACCAACTCCTTGGCGACGAAGATTTAAGCGATCGCGATCATCGTCTTGTGGCGGGAAAGATGGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGGCG
GAGGATTTGGTTTTGCAGAACTTCGATGCGAGTTTTGCGGAAATGTTCCATGGCTTTTTGCATGAATCTTCTACACAGTCTGAGATGCCTGCAGGTTTAAGTGCACTACT
GTAA
Protein sequenceShow/hide protein sequence
MDLIKRQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQSSASAFLDYQLLGDEDLSDRDHRLVAGKMETAAYQSSVAPA
EDLVLQNFDASFAEMFHGFLHESSTQSEMPAGLSALL