CuGenDBv2

Gene ID	Spg010089
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase I subunit like
Genome location	scaffold7:5342754..5343248
RNA-Seq Expression	Spg010089
Synteny	Spg010089
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7032002.1 hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.2e-50

77.98

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Query:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    + S SS  SLSTRS       KF LH  +L  +SQI   R RFTA +SNN NGLGGNIKEREGERNGAKGSNG DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_022139143.1 uncharacterized protein LOC111010120 [Momordica charantia]

4.3e-59

82.74

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Query:  MLGFLNLPCQWNSSSLQLISSI---SSSSSLSTRSL-RCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGF  LPCQW+S+S++L+SS    SSSS +S R++ R KFTLH A L  +SQI RNR RFTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERG
Subjt:  MLGFLNLPCQWNSSSLQLISSI---SSSSSLSTRSL-RCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_022957096.1 uncharacterized protein LOC111458579 [Cucurbita moschata]

1.8e-49

76.79

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Query:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    + S SS  SLSTRS       KF LH +    +SQI   R RFTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_022993576.1 uncharacterized protein LOC111489528 [Cucurbita maxima]

3.1e-49

76.19

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Query:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    +SS SS   LSTRS       KF LH +    +SQI   R RF A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_023549272.1 uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]

1.5e-51

78.57

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Query:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    +SS SS  SLSTRS       KF LH +    +SQI   R RFTA +SNN NGLGGNIKEREGERNGAKGSNGGDDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BFX0 uncharacterized protein LOC103489407

2.6e-46

75.3

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Query:  MLGFLNLPCQWN-SSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV
        MLGFL +P Q   S SL  + SISS SSL       KF LH  F   +  I  NR RFTA +SN     GG+IKEREGERNGAK  SNGGDDLKKERGPV
Subjt:  MLGFLNLPCQWN-SSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV

Query:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A5D3CD16 Uncharacterized protein

2.6e-46

75.3

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Query:  MLGFLNLPCQWN-SSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV
        MLGFL +P Q   S SL  + SISS SSL       KF LH  F   +  I  NR RFTA +SN     GG+IKEREGERNGAK  SNGGDDLKKERGPV
Subjt:  MLGFLNLPCQWN-SSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV

Query:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A6J1CF05 uncharacterized protein LOC111010120

2.1e-59

82.74

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Query:  MLGFLNLPCQWNSSSLQLISSI---SSSSSLSTRSL-RCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGF  LPCQW+S+S++L+SS    SSSS +S R++ R KFTLH A L  +SQI RNR RFTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERG
Subjt:  MLGFLNLPCQWNSSSLQLISSI---SSSSSLSTRSL-RCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A6J1GYA2 uncharacterized protein LOC111458579

8.8e-50

76.79

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Query:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    + S SS  SLSTRS       KF LH +    +SQI   R RFTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A6J1JWP5 uncharacterized protein LOC111489528

1.5e-49

76.19

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Query:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    +SS SS   LSTRS       KF LH +    +SQI   R RF A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G40045.1 unknown protein

3.3e-17

57.69

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Query:  SSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFIL
        ++ NGN    + KE  G  N    ++ G+  KK++   F+ KW ELL +PD DN +AV L G+L WAS+QVL QLFFIS AILVAALKYSFIAALLIFIL
Subjt:  SSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFIL

Query:  ITLL
        +TLL
Subjt:  ITLL

Sequences

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CDS sequence

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ATGCTAGGGTTTCTTAATCTCCCATGCCAATGGAATTCCTCATCTCTCCAACTTATCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATT
CACTCTCCATCCCGCCTTTCTCAGACCGCAATCTCAAATTCATAGAAACCGCACGAGATTCACGGCGTTCTCCAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGG
AGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCG
GATCCGGATAACATCTTGGCGGTTGCCCTGACTGGTTTGCTTGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTCTGGCTATTTTAGTGGCGGCTCT
TAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

mRNA sequence

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Protein sequence

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MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDP
DPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

Spg010089 (gene) of Sponge gourd (cylindrica) v1 genome