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Spg010282 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010282
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:19255921..19259503
RNA-Seq ExpressionSpg010282
SyntenySpg010282
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.3e-1153.26Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        PRGNR  LQT EL KT                 VEIELPV DTLP S ESS S+S S         + EDDV WLH +FR K AGGPGGGVT
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-1149.5Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  V
        V
Subjt:  V

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.7e-1253.12Show/hide
Query:  RPRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVQV
        RPRGNR  LQT +L KT                 VEIELPVPDTLPTS ES  S+S ST        +  DDV WLHA+FR K AGGPGGGVT  +
Subjt:  RPRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVQV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]4.2e-1142.98Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRW
        PRGNRS LQT EL KT                 VEIELPVPDTLPTS ES  S+SS+  +                          EG    +  DDV W
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRW

Query:  LHAIFRTKLAGGPGGGVTVQV
        LH +FR K+AGGPGGGVT ++
Subjt:  LHAIFRTKLAGGPGGGVTVQV

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-1149.5Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.6e-1149.5Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  V
        V
Subjt:  V

A0A5A7UAH6 CCHC-type domain-containing protein4.5e-1143.2Show/hide
Query:  RANSCSKESQDEGHMVKSQDIEDSRPRGNRSDLQTRELAKTVEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQRVS
        R  S    S+  G +V S D     PRGNR +L T +L KTVEIELPVPDTLPTS ESS+S+SS+  +                          EG    
Subjt:  RANSCSKESQDEGHMVKSQDIEDSRPRGNRSDLQTRELAKTVEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQRVS

Query:  LEEDDVRWLHAIFRTKLAGGPGGGV
        +  DD+ WLHA+F  K AG PGGGV
Subjt:  LEEDDVRWLHAIFRTKLAGGPGGGV

A0A5A7VIY9 Uncharacterized protein2.0e-1142.98Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRW
        PRGNRS LQT EL KT                 VEIELPVPDTLPTS ES  S+SS+  +                          EG    +  DDV W
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRW

Query:  LHAIFRTKLAGGPGGGVTVQV
        LH +FR K+AGGPGGGVT ++
Subjt:  LHAIFRTKLAGGPGGGVTVQV

A0A5D3BAD1 Retrotrans_gag domain-containing protein8.2e-1353.12Show/hide
Query:  RPRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVQV
        RPRGNR  LQT +L KT                 VEIELPVPDTLPTS ES  S+S ST        +  DDV WLHA+FR K AGGPGGGVT  +
Subjt:  RPRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVQV

A0A5D3D150 Reverse transcriptase2.6e-1149.5Show/hide
Query:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR  LQT EL KT                 VEIELP+PDTLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSDLQTRELAKT-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTCCGTGGAATCTTTATCTTCTCCAATCAACTCCAGACAACTGCTAGTGTCTTCCCCGCTATTCTCCAGGCCAAGAACGATTTGTGGGAGTCTATAGAGATAGG
GATTGGAAAGGGAATGCTTAATGAATCAAGCTCTAGAGAGATTCTTTTAGCATCTACTTATAGAGCAAATTCATGCTCCAAGGAGTCTCAAGATGAAGGACACATGGTGA
AGAGCCAAGACATAGAGGATTCTAGGCCAAGAGGAAATAGGTCGGATCTACAAACTAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCA
ACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAA
GCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTCAAGTCCTAGAGTTAGTACTTAAGGGAACAACCTCTCTACTATCTCTAAAATGGGTAGGAGCGAATTCCGTCTTGC
GAGACTACGTCCCCAGCTATCTATCTGATCGTATCCACAAAATGGTAGGCTTATTGAGTCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCTCCGTGGAATCTTTATCTTCTCCAATCAACTCCAGACAACTGCTAGTGTCTTCCCCGCTATTCTCCAGGCCAAGAACGATTTGTGGGAGTCTATAGAGATAGG
GATTGGAAAGGGAATGCTTAATGAATCAAGCTCTAGAGAGATTCTTTTAGCATCTACTTATAGAGCAAATTCATGCTCCAAGGAGTCTCAAGATGAAGGACACATGGTGA
AGAGCCAAGACATAGAGGATTCTAGGCCAAGAGGAAATAGGTCGGATCTACAAACTAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCA
ACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAA
GCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTCAAGTCCTAGAGTTAGTACTTAAGGGAACAACCTCTCTACTATCTCTAAAATGGGTAGGAGCGAATTCCGTCTTGC
GAGACTACGTCCCCAGCTATCTATCTGATCGTATCCACAAAATGGTAGGCTTATTGAGTCGGTGA
Protein sequenceShow/hide protein sequence
MDLRGIFIFSNQLQTTASVFPAILQAKNDLWESIEIGIGKGMLNESSSREILLASTYRANSCSKESQDEGHMVKSQDIEDSRPRGNRSDLQTRELAKTVEIELPVPDTLP
TSVESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVQVLELVLKGTTSLLSLKWVGANSVLRDYVPSYLSDRIHKMVGLLSR