; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010298 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010298
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:28391585..28399494
RNA-Seq ExpressionSpg010298
SyntenySpg010298
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-2268.97Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYNESVHI-------------VNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG
        +VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+             ++++F+V VGSTGIVRGDDVCWLHAVF AK  GGPGGG
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYNESVHI-------------VNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]4.2e-2961.98Show/hide
Query:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR
        G PHYDK+DG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S                       S GIVR
Subjt:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR

Query:  GDDVCWLHAVFPAKLAGGPGG
        GDDVCWLH VF AK  GGPGG
Subjt:  GDDVCWLHAVFPAKLAGGPGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]4.2e-2961.98Show/hide
Query:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR
        G PHYDK+DG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S                       S GIVR
Subjt:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR

Query:  GDDVCWLHAVFPAKLAGGPGG
        GDDVCWLH VF AK  GGPGG
Subjt:  GDDVCWLHAVFPAKLAGGPGG

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]7.0e-2438.37Show/hide
Query:  LVEIELPVPDTLPTSAES-SRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG-------SEINLSTSG-FLFGVSYT
        +VEIELPVPDTLPTSAES +++    W  + +  +    V FNVSVGS GI+RGDDVCWLHAVF AK+AG P GG        E    T G    G S  
Subjt:  LVEIELPVPDTLPTSAES-SRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG-------SEINLSTSG-FLFGVSYT

Query:  EGIKRRKIKDNREARICVVLFR-GISGQIGWESRFHFFRPRG-----NRSSLQTGELDKTVS----------------DKMNFENVEIELPVP-------
         G  + + +  R AR    + R  I+G    E  +   R +        SS    +++K V                 D   F+ +  E   P       
Subjt:  EGIKRRKIKDNREARICVVLFR-GISGQIGWESRFHFFRPRG-----NRSSLQTGELDKTVS----------------DKMNFENVEIELPVP-------

Query:  ---------DTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPG
                  +L       + +  + FNVSVGST IVRGDDVCWLHAVFRAK  GGPG
Subjt:  ---------DTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.4e-2450Show/hide
Query:  LFGVSYTEGIKRRKIKDNREARICVVLFRGIS-GQIGWESRFHFFRPRGNRSSLQTGELDKTVSDKMNF------ENVEIELPVPDTLPTSAESSRSSSS
        LF +SY EG K             +VL   +S  +I   ++  +  PRGNR SLQTGELDKTV   ++        N  IELPVPDTLPTSAESS S+SS
Subjt:  LFGVSYTEGIKRRKIKDNREARICVVLFRGIS-GQIGWESRFHFFRPRGNRSSLQTGELDKTVSDKMNF------ENVEIELPVPDTLPTSAESSRSSSS

Query:  TW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPGG
        TW                           FNVSVGSTGIVRGDDVCWLHAVFRAK VGGPGG
Subjt:  TW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase4.9e-2368.97Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYNESVHI-------------VNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG
        +VEIELPVPDTLPTSAESS S+SSTWLELY ESVH+             ++++F+V VGSTGIVRGDDVCWLHAVF AK  GGPGGG
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYNESVHI-------------VNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG

A0A5A7VGQ5 Uncharacterized protein2.0e-2961.98Show/hide
Query:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR
        G PHYDK+DG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S                       S GIVR
Subjt:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR

Query:  GDDVCWLHAVFPAKLAGGPGG
        GDDVCWLH VF AK  GGPGG
Subjt:  GDDVCWLHAVFPAKLAGGPGG

A0A5D3BG85 Uncharacterized protein2.0e-2961.98Show/hide
Query:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR
        G PHYDK+DG+A RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S                       S GIVR
Subjt:  GRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVR

Query:  GDDVCWLHAVFPAKLAGGPGG
        GDDVCWLH VF AK  GGPGG
Subjt:  GDDVCWLHAVFPAKLAGGPGG

A0A5D3C0X3 Retrotrans_gag domain-containing protein3.4e-2438.37Show/hide
Query:  LVEIELPVPDTLPTSAES-SRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG-------SEINLSTSG-FLFGVSYT
        +VEIELPVPDTLPTSAES +++    W  + +  +    V FNVSVGS GI+RGDDVCWLHAVF AK+AG P GG        E    T G    G S  
Subjt:  LVEIELPVPDTLPTSAES-SRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLAGGPGGG-------SEINLSTSG-FLFGVSYT

Query:  EGIKRRKIKDNREARICVVLFR-GISGQIGWESRFHFFRPRG-----NRSSLQTGELDKTVS----------------DKMNFENVEIELPVP-------
         G  + + +  R AR    + R  I+G    E  +   R +        SS    +++K V                 D   F+ +  E   P       
Subjt:  EGIKRRKIKDNREARICVVLFR-GISGQIGWESRFHFFRPRG-----NRSSLQTGELDKTVS----------------DKMNFENVEIELPVP-------

Query:  ---------DTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPG
                  +L       + +  + FNVSVGST IVRGDDVCWLHAVFRAK  GGPG
Subjt:  ---------DTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPG

A0A5D3CJX3 CCHC-type domain-containing protein1.2e-2450Show/hide
Query:  LFGVSYTEGIKRRKIKDNREARICVVLFRGIS-GQIGWESRFHFFRPRGNRSSLQTGELDKTVSDKMNF------ENVEIELPVPDTLPTSAESSRSSSS
        LF +SY EG K             +VL   +S  +I   ++  +  PRGNR SLQTGELDKTV   ++        N  IELPVPDTLPTSAESS S+SS
Subjt:  LFGVSYTEGIKRRKIKDNREARICVVLFRGIS-GQIGWESRFHFFRPRGNRSSLQTGELDKTVSDKMNF------ENVEIELPVPDTLPTSAESSRSSSS

Query:  TW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPGG
        TW                           FNVSVGSTGIVRGDDVCWLHAVFRAK VGGPGG
Subjt:  TW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCAGGCCCCACTACGACAAAAACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACA
ACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATAATG
AGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTTTCCGGCTAAGCTAGCA
GGTGGTCCGGGAGGGGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTGTGAGCTACACAGAAGGAATCAAGAGGAGGAAGATAAAGGATAACAGAGAAGC
TCGAATCTGTGTTGTCTTATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAAC
TAGATAAGACTGTCAGTGACAAAATGAATTTCGAAAATGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG
TGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCAGGCCCCACTACGACAAAAACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACA
ACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATAATG
AGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTTTCCGGCTAAGCTAGCA
GGTGGTCCGGGAGGGGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTGTGAGCTACACAGAAGGAATCAAGAGGAGGAAGATAAAGGATAACAGAGAAGC
TCGAATCTGTGTTGTCTTATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAAC
TAGATAAGACTGTCAGTGACAAAATGAATTTCGAAAATGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG
TGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGATGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MGVLGRPHYDKNDGSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYNESVHIVNVLFNVSVGSTGIVRGDDVCWLHAVFPAKLA
GGPGGGSEINLSTSGFLFGVSYTEGIKRRKIKDNREARICVVLFRGISGQIGWESRFHFFRPRGNRSSLQTGELDKTVSDKMNFENVEIELPVPDTLPTSAESSRSSSST
WFNVSVGSTGIVRGDDVCWLHAVFRAKLVGGPGG