; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010433 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010433
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold5:13018206..13021940
RNA-Seq ExpressionSpg010433
SyntenySpg010433
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050143.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-1748.78Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST
        + ++F +PR  +   E F ++F   H KE     T + + +          +EVDNS + +Q+TSVFDRIKP TTR SVFQR+SMA   EE+QC  STST
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST

Query:  RPSAFQRLGVSTSKKNQFSTSVF
        R SAF+RL +STSKK+Q ST VF
Subjt:  RPSAFQRLGVSTSKKNQFSTSVF

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-1748.39Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST
        + ++F +PR+ +   E F ++F   H KE       + + +          EEV+NS + +QRTSVFDRIKP TTR SVFQR+SMA   EE+QC  STST
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST

Query:  RPSAFQRLGVSTSKKNQFSTSVFD
        R SAF+RL +STSKK++ STS+FD
Subjt:  RPSAFQRLGVSTSKKNQFSTSVFD

KAA0065363.1 Retrotransposon gag protein [Cucumis melo var. makuwa]7.7e-1848.7Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTSTRPSAFQRLGV
        + ++F +PR+ +I  E F ++F   H KE    +  + + + EVDNS + +Q T VFDRIKP TTR S+FQR+SMA   EE+QC  STSTR SAF++L +
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTSTRPSAFQRLGV

Query:  STSKKNQFSTSVFDQ
        STSKK++  TS+FD+
Subjt:  STSKKNQFSTSVFDQ

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-1648.41Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTS
        + ++F QPRQ +   E F ++F              H      F  +Y    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA   E++QC  ST 
Subjt:  RSKEFSQPRQPVIAKELFSKTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTS

Query:  TRPSAFQRLGVSTSKKNQFSTSVFDQ
        TR SAF+RL +STSKK++ STS FD+
Subjt:  TRPSAFQRLGVSTSKKNQFSTSVFDQ

TYK23553.1 hypothetical protein E5676_scaffold500G00600 [Cucumis melo var. makuwa]2.5e-1647.2Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST
        ++++F QPRQ +   E F ++F   H +E       +   +          EEVDNS K +QRTSVFDRIKP TTR SVF+R+SM    EE+QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST

Query:  RPSAFQRLGVSTSKKNQFSTSVFDQ
        R SAF+RL +STSKK++ STS FD+
Subjt:  RPSAFQRLGVSTSKKNQFSTSVFDQ

TrEMBL top hitse value%identityAlignment
A0A5A7U2K7 Retrotransposon gag protein4.1e-1748.78Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST
        + ++F +PR  +   E F ++F   H KE     T + + +          +EVDNS + +Q+TSVFDRIKP TTR SVFQR+SMA   EE+QC  STST
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST

Query:  RPSAFQRLGVSTSKKNQFSTSVF
        R SAF+RL +STSKK+Q ST VF
Subjt:  RPSAFQRLGVSTSKKNQFSTSVF

A0A5A7U974 Retrotransposon gag protein1.2e-1646.83Show/hide
Query:  QRSKEFSQPRQPVIAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTS
        ++ ++F QPR+ +   E F ++F +      +      T+  ++V       EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA   EE+QC +ST 
Subjt:  QRSKEFSQPRQPVIAKELFSKTFHKKEEGNFV------TSYCIDV-------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTS

Query:  TRPSAFQRLGVSTSKKNQFSTSVFDQ
        TR SAF+RL +S SKK++ STS FD+
Subjt:  TRPSAFQRLGVSTSKKNQFSTSVFDQ

A0A5A7UA77 Retrotransposon gag protein1.1e-1748.39Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST
        + ++F +PR+ +   E F ++F   H KE       + + +          EEV+NS + +QRTSVFDRIKP TTR SVFQR+SMA   EE+QC  STST
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTST

Query:  RPSAFQRLGVSTSKKNQFSTSVFD
        R SAF+RL +STSKK++ STS+FD
Subjt:  RPSAFQRLGVSTSKKNQFSTSVFD

A0A5D3BLW3 Retrotransposon gag protein7.0e-1748.41Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTS
        + ++F QPRQ +   E F ++F              H      F  +Y    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA   E++QC  ST 
Subjt:  RSKEFSQPRQPVIAKELFSKTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTS

Query:  TRPSAFQRLGVSTSKKNQFSTSVFDQ
        TR SAF+RL +STSKK++ STS FD+
Subjt:  TRPSAFQRLGVSTSKKNQFSTSVFDQ

A0A5D3DBL7 Retrotransposon gag protein3.7e-1848.7Show/hide
Query:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTSTRPSAFQRLGV
        + ++F +PR+ +I  E F ++F   H KE    +  + + + EVDNS + +Q T VFDRIKP TTR S+FQR+SMA   EE+QC  STSTR SAF++L +
Subjt:  RSKEFSQPRQPVIAKELFSKTF---HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTSTRPSAFQRLGV

Query:  STSKKNQFSTSVFDQ
        STSKK++  TS+FD+
Subjt:  STSKKNQFSTSVFDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGC
ATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCAATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCAAATTAAGTCAA
ACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTG
CATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTA
TGGCCGCGACAACAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAACCAATTTTCAACATCT
GTCTTTGATCAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTC
ACACGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTTGCTGCAGTTCC
TTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCGAAG
GTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCAT
TCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCATTTCGCTGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCA
CGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGTTTCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTG
ACGCTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACACTACGCTGCTTCCTTCTCCAAGTT
TGAAGGTTCTCATGCTACGCTAGAATGCGTTGTTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTT
CTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCACTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTG
CGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGTGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAAGGCGTGGTGGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGC
ATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCAATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCAAATTAAGTCAA
ACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTG
CATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTA
TGGCCGCGACAACAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAACCAATTTTCAACATCT
GTCTTTGATCAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTC
ACACGCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTTGCTGCAGTTCC
TTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCGAAG
GTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCAT
TCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCATTTCGCTGCAGTTCATTCTCTCAGAGTTCGAAGGTTCTCA
CGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGTTTCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTG
ACGCTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACACTACGCTGCTTCCTTCTCCAAGTT
TGAAGGTTCTCATGCTACGCTAGAATGCGTTGTTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTT
CTCACGCTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCACTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTG
CGCTACTTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGTGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAAGGCGTGGTGGTG
A
Protein sequenceShow/hide protein sequence
MNNFYTGSTTYCCFNEMRLQEDKAPIIASGEITLQGACTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAKLSQ
TQRSKEFSQPRQPVIAKELFSKTFHKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATTEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTS
VFDQDFIPPNLMSRSPQVRCSTHPKFAVPSSKFERFSHAPLLQFIPPSSKVLTRFVAVPSPQVRRFSCALLQFLLPKFEGSHALRCSSFLKVLEGSHALRCSSFSPKFSK
VLTRFAAVPSSKVRSTRFVAVPSFQFRRFSRVSLQFILSISKVPTRCAAVPSLKFEGSHAFRCSSFSQSSKVLTLFRCSSFSPSSKFLLPKFEGFHTLRYSSFSPSSKVL
TLRCFLHHVRRFSRCTTSLFLLQVRRFSHYAASFSKFEGSHATLECVVVLLSSLSSKDPTLRCCVASFTKFEGSHAALLRCSFSKFEGSHAALLPSPSSKVFMLRSAALL
RYFLKSEEHVLVLVQRRGGGKSTRNMSLYSCRKAWW