; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010446 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010446
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:32069630..32075136
RNA-Seq ExpressionSpg010446
SyntenySpg010446
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.6e-2732.08Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL------EPQ-----------------ADTRK-------EAVEDVEASDL-
        G+K   AD+NPFSE ESHFADAKFY+K+D++ E +  E+PL+ + + L L      EPQ                 A  RK       E+ + ++  D+ 
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL------EPQ-----------------ADTRK-------EAVEDVEASDL-

Query:  -------------------------------------------------------------------------------------KKGLGYKSPKPVRIT
                                                                                             +KGLGYKSP+P+RIT
Subjt:  -------------------------------------------------------------------------------------KKGLGYKSPKPVRIT

Query:  RRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRL
        R+GK KV D+NHITV+EVD  +E E   QRTS F RI P VAR  VF+RLS+ E E +  Q T++  R SVF+RL++   EE+    T   T+ SAF+RL
Subjt:  RRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRL

Query:  NMPIAKEESTFSTPDVTR
        ++   K   T   P + R
Subjt:  NMPIAKEESTFSTPDVTR

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-2833.14Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIK---------------------------------------------------------
        GIK   AD NPFSEAESHFADAKFY+K+DN+ E +  E+PL K                                                         
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIK---------------------------------------------------------

Query:  --------------------------------------------------KNEKLNLEPQ-ADTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKV
                                                          K+ K++ +P+ + T+K+ + +  A  + +KGLGYKSP+P+RITR+GK KV
Subjt:  --------------------------------------------------KNEKLNLEPQ-ADTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKV

Query:  ADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKE
         D NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS+ E+E +  Q T++  R S F+RL+M   +E+        TR SAF+RL+M   K 
Subjt:  ADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKE

Query:  ESTFSTPDVTRPSVFQRLSVTTRRDKKEQGLRSSSLAT
          T       RP +F RL     RD+       SS+ T
Subjt:  ESTFSTPDVTRPSVFQRLSVTTRRDKKEQGLRSSSLAT

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]1.3e-2935.14Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL--------------------EPQADTRK----------------------
        G K    D+NPFSEAESHFADAKFY+K+D++ E +  E+ L+ + +   L                    E    T K                      
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL--------------------EPQADTRK----------------------

Query:  ---------EAVEDVEASDL---------------KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRL
                 E+ + ++  D+               KKGLGYKSP+P+RITR+GK KV D+NHITV+EVD  + KE   QRTS F RI P VARA VF+RL
Subjt:  ---------EAVEDVEASDL---------------KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRL

Query:  SVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTPDVTR-----PSVFQRLSVTTRRDKKEQGLRSS
        S+ E + +  Q T++  R S F+RL++   EE+        T+ SAF+RL++   K   T   P +       P V    S+ T+  KKE   R S
Subjt:  SVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTPDVTR-----PSVFQRLSVTTRRDKKEQGLRSS

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]3.8e-2933.11Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNLE-------------------------------------------------
        G+K   AD+NPFSEAESHFADAKFY+K+D++ E +  E+PL+ + + L L+                                                 
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNLE-------------------------------------------------

Query:  -----------PQADTRK------------------EAVEDVEASDLK-------------------------KGLGYKSPKPVRITRRGKGKVADTNHI
                   PQ   R+                  + +   E   LK                         KGLGYKSP+P+RITR+GK KV D NHI
Subjt:  -----------PQADTRK------------------EAVEDVEASDLK-------------------------KGLGYKSPKPVRITRRGKGKVADTNHI

Query:  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFST
        TV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++  R S F+RL++   EE+    T   T+ SAF+RL++   K   T   
Subjt:  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFST

Query:  PDVTR
        P + R
Subjt:  PDVTR

KAA0056394.1 uncharacterized protein E6C27_scaffold186G001420 [Cucumis melo var. makuwa]1.7e-2635.56Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNT-------GETIPAEIP---------------------LIKKNEKLNL--------------EPQA----
        G+K    D+NPFSEAESHFADAKFY+K+D++       GE+   E P                     + K+  K++L              +P+A    
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNT-------GETIPAEIP---------------------LIKKNEKLNL--------------EPQA----

Query:  -------------------------DTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARA
                                  T+K+ + +  A  + +KGLGYKSP+P+RIT +GK KV D NHITV+EVD  +EKE   QRTS F RI P V RA
Subjt:  -------------------------DTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARA

Query:  LVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTP
         VF+RLS+ E E +  Q T++  + S F+RL++   EE+        T+ SAF+RL++   K   T   P
Subjt:  LVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTP

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein5.3e-2933.14Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIK---------------------------------------------------------
        GIK   AD NPFSEAESHFADAKFY+K+DN+ E +  E+PL K                                                         
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIK---------------------------------------------------------

Query:  --------------------------------------------------KNEKLNLEPQ-ADTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKV
                                                          K+ K++ +P+ + T+K+ + +  A  + +KGLGYKSP+P+RITR+GK KV
Subjt:  --------------------------------------------------KNEKLNLEPQ-ADTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKV

Query:  ADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKE
         D NHITV+EVD  KEKE   QRTS F RI P VAR  VF+RLS+ E+E +  Q T++  R S F+RL+M   +E+        TR SAF+RL+M   K 
Subjt:  ADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKE

Query:  ESTFSTPDVTRPSVFQRLSVTTRRDKKEQGLRSSSLAT
          T       RP +F RL     RD+       SS+ T
Subjt:  ESTFSTPDVTRPSVFQRLSVTTRRDKKEQGLRSSSLAT

A0A5A7UMH1 Uncharacterized protein8.4e-2735.56Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNT-------GETIPAEIP---------------------LIKKNEKLNL--------------EPQA----
        G+K    D+NPFSEAESHFADAKFY+K+D++       GE+   E P                     + K+  K++L              +P+A    
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNT-------GETIPAEIP---------------------LIKKNEKLNL--------------EPQA----

Query:  -------------------------DTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARA
                                  T+K+ + +  A  + +KGLGYKSP+P+RIT +GK KV D NHITV+EVD  +EKE   QRTS F RI P V RA
Subjt:  -------------------------DTRKEAVEDVEASDL-KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARA

Query:  LVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTP
         VF+RLS+ E E +  Q T++  + S F+RL++   EE+        T+ SAF+RL++   K   T   P
Subjt:  LVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTP

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.8e-2933.11Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNLE-------------------------------------------------
        G+K   AD+NPFSEAESHFADAKFY+K+D++ E +  E+PL+ + + L L+                                                 
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNLE-------------------------------------------------

Query:  -----------PQADTRK------------------EAVEDVEASDLK-------------------------KGLGYKSPKPVRITRRGKGKVADTNHI
                   PQ   R+                  + +   E   LK                         KGLGYKSP+P+RITR+GK KV D NHI
Subjt:  -----------PQADTRK------------------EAVEDVEASDLK-------------------------KGLGYKSPKPVRITRRGKGKVADTNHI

Query:  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFST
        TV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++  R S F+RL++   EE+    T   T+ SAF+RL++   K   T   
Subjt:  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFST

Query:  PDVTR
        P + R
Subjt:  PDVTR

A0A5D3BSG5 Uncharacterized protein7.6e-2832.08Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL------EPQ-----------------ADTRK-------EAVEDVEASDL-
        G+K   AD+NPFSE ESHFADAKFY+K+D++ E +  E+PL+ + + L L      EPQ                 A  RK       E+ + ++  D+ 
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL------EPQ-----------------ADTRK-------EAVEDVEASDL-

Query:  -------------------------------------------------------------------------------------KKGLGYKSPKPVRIT
                                                                                             +KGLGYKSP+P+RIT
Subjt:  -------------------------------------------------------------------------------------KKGLGYKSPKPVRIT

Query:  RRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRL
        R+GK KV D+NHITV+EVD  +E E   QRTS F RI P VAR  VF+RLS+ E E +  Q T++  R SVF+RL++   EE+    T   T+ SAF+RL
Subjt:  RRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRL

Query:  NMPIAKEESTFSTPDVTR
        ++   K   T   P + R
Subjt:  NMPIAKEESTFSTPDVTR

A0A5D3C8N8 Ribonuclease H6.2e-3035.14Show/hide
Query:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL--------------------EPQADTRK----------------------
        G K    D+NPFSEAESHFADAKFY+K+D++ E +  E+ L+ + +   L                    E    T K                      
Subjt:  GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNL--------------------EPQADTRK----------------------

Query:  ---------EAVEDVEASDL---------------KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRL
                 E+ + ++  D+               KKGLGYKSP+P+RITR+GK KV D+NHITV+EVD  + KE   QRTS F RI P VARA VF+RL
Subjt:  ---------EAVEDVEASDL---------------KKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRL

Query:  SVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTPDVTR-----PSVFQRLSVTTRRDKKEQGLRSS
        S+ E + +  Q T++  R S F+RL++   EE+        T+ SAF+RL++   K   T   P +       P V    S+ T+  KKE   R S
Subjt:  SVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTPDVTR-----PSVFQRLSVTTRRDKKEQGLRSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCATAAAACCCAACAACGCTGACACTAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACTGGGGAGACTATACCTGC
AGAAATCCCCTTGATAAAAAAGAATGAGAAACTCAATTTAGAACCCCAAGCTGATACAAGAAAGGAAGCTGTTGAAGATGTGGAGGCTTCTGATCTGAAAAAGGGGCTTG
GATATAAGTCGCCAAAACCGGTTCGCATAACAAGAAGAGGGAAGGGGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAAGT
GTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAGAGCACACAACCTAC
TAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAGGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGATCTTCAGCTTTTCAAAGGT
TAAATATGCCCATTGCGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGGAACAA
GGGCTTCGTTCTTCAAGTTTGGCAACTCACTCACTCCAAGTTTGGCATCTCGTCTCAAGTTTGGTGTTTCGCTTCTTCAAAGTTTGGCGTCTCACCCCTTCAAGTATGGC
GCCTTGTTTCCTCAAGTTTGCATTCTCCATGGTGGTGAAATCACTGCAAGTGAAGCTGACGACAACCGAGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACT
GGTCTAGACAGGTGGTGAAATCACTGCAATTGAAGCTGATGACGACCGTGGTGACCACCCCTACAGGAAACTACAGTCATCAAAGCGGCTGGTCTAGACAGGTGGTGAAA
TCACTGCAAGTGAAGCTGATGTCGATCGTGGTGACCACCCCTGCAAGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCAGTGCAAGTGAAGCTGAT
GTCGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGATAG
mRNA sequenceShow/hide mRNA sequence
GGCATAAAACCCAACAACGCTGACACTAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACTGGGGAGACTATACCTGC
AGAAATCCCCTTGATAAAAAAGAATGAGAAACTCAATTTAGAACCCCAAGCTGATACAAGAAAGGAAGCTGTTGAAGATGTGGAGGCTTCTGATCTGAAAAAGGGGCTTG
GATATAAGTCGCCAAAACCGGTTCGCATAACAAGAAGAGGGAAGGGGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGATTCAAAAGAAAAAGAAAGT
GTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAATGGAAGAAGAGAGCACACAACCTAC
TAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAGGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGATCTTCAGCTTTTCAAAGGT
TAAATATGCCCATTGCGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAGACAAAAAGGAACAA
GGGCTTCGTTCTTCAAGTTTGGCAACTCACTCACTCCAAGTTTGGCATCTCGTCTCAAGTTTGGTGTTTCGCTTCTTCAAAGTTTGGCGTCTCACCCCTTCAAGTATGGC
GCCTTGTTTCCTCAAGTTTGCATTCTCCATGGTGGTGAAATCACTGCAAGTGAAGCTGACGACAACCGAGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACT
GGTCTAGACAGGTGGTGAAATCACTGCAATTGAAGCTGATGACGACCGTGGTGACCACCCCTACAGGAAACTACAGTCATCAAAGCGGCTGGTCTAGACAGGTGGTGAAA
TCACTGCAAGTGAAGCTGATGTCGATCGTGGTGACCACCCCTGCAAGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCAGTGCAAGTGAAGCTGAT
GTCGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGATAG
Protein sequenceShow/hide protein sequence
GIKPNNADTNPFSEAESHFADAKFYMKSDNTGETIPAEIPLIKKNEKLNLEPQADTRKEAVEDVEASDLKKGLGYKSPKPVRITRRGKGKVADTNHITVEEVDDSKEKES
VDQRTSVFRRIRPPVARALVFQRLSVNEMEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTPNVTRSSAFQRLNMPIAKEESTFSTPDVTRPSVFQRLSVTTRRDKKEQ
GLRSSSLATHSLQVWHLVSSLVFRFFKVWRLTPSSMAPCFLKFAFSMVVKSLQVKLTTTEVTTPAGNYSHQSDWSRQVVKSLQLKLMTTVVTTPTGNYSHQSGWSRQVVK
SLQVKLMSIVVTTPARNYSHQSDWSRQVVKSVQVKLMSTVVTTPAGNYSHQSDWSR