; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010452 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010452
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:9624139..9630924
RNA-Seq ExpressionSpg010452
SyntenySpg010452
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034814.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-2242.33Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLV RRK +KQ++ QK+S   + ++ K KS+R+N +K +R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  ++TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-2643.35Show/hide
Query:  GSLIQFGTFDPIIVWSQPEA-PGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++  PEA   NDF      +E+     +QI+D D GWTLVTRRK +KQN+ QK+SR ++E++R  KS+R+  +K +R+L PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPEA-PGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLKQRGQSSQAI
        E  +   P+TLK+FF   F     +IV CH +  T+DD   S + E   K EDL S  I+DLL    ++   I
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLKQRGQSSQAI

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.7e-2342.94Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.7e-2342.94Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]3.7e-2342.94Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

TrEMBL top hitse value%identityAlignment
A0A5A7SUA1 Ty3-gypsy retrotransposon protein1.1e-2242.33Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLV RRK +KQ++ QK+S   + ++ K KS+R+N +K +R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  ++TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

A0A5A7TPD2 Ty3-gypsy retrotransposon protein7.7e-2743.35Show/hide
Query:  GSLIQFGTFDPIIVWSQPEA-PGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++  PEA   NDF      +E+     +QI+D D GWTLVTRRK +KQN+ QK+SR ++E++R  KS+R+  +K +R+L PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPEA-PGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLKQRGQSSQAI
        E  +   P+TLK+FF   F     +IV CH +  T+DD   S + E   K EDL S  I+DLL    ++   I
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLKQRGQSSQAI

A0A5A7TZU9 Ribonuclease H1.8e-2342.94Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

A0A5D3BIH8 Uncharacterized protein1.8e-2342.94Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

A0A5D3D1E5 Ribonuclease H1.8e-2342.94Show/hide
Query:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE
        GSLIQFG+ +P++++S PE    NDF  RA   +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+EE+E
Subjt:  GSLIQFGTFDPIIVWSQPE-APGNDFPERALYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENE

Query:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL
           +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+DLL
Subjt:  EHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTGTTTGGTTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGA
TCCTGACGTGATGTCTGTTATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTA
TTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGC
TGGACACTCGTAACCCGACGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAA
GAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAA
TCAATCAAATTGTTACATGTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATA
GATGATTTACTAAAACAAAGGGGGCAATCAAGTCAAGCCATCCACTTGAAGTTCCTCAATTCTTCACGTATGTCCTCTAAGTTTTTACGAGTCATGGCCAAAGACTTAGC
ATATTCATCAGTCATGACAGAGGCACACTCAATATTGGTGATCTCTTCACGGACTTTGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTC
GAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTCCAAATTGCAGTTTGAGTCAATCTTCGCTCGTTTCAAGTTCAAGTTCGAGCTT
TCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAG
TACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCGACTTCAAGTTGAAGGCCTCATTCGCTTCATCTTCAAAGTTTGTGGTTGACGGCCTCGTTCGTTCATCTTCAA
AGTTGACGGCACTTGACGGGCTCGCTTCATCTTCAAAATTGGCGGCAGTTGACGGGCTCGCTTCATCTTCAAAATTGGCGGCAGTTGACGGGCTCGCTTCATCTTCAAAA
TTGGCGGCAGTTGATAGGCTCGCTTCATCTTCAAGATTGGTAGTTGAAGTATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTGTTTGGTTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGA
TCCTGACGTGATGTCTGTTATGATGGCTGACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTA
TTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCCAGAAAGGGCTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGC
TGGACACTCGTAACCCGACGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAA
GAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAA
TCAATCAAATTGTTACATGTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATA
GATGATTTACTAAAACAAAGGGGGCAATCAAGTCAAGCCATCCACTTGAAGTTCCTCAATTCTTCACGTATGTCCTCTAAGTTTTTACGAGTCATGGCCAAAGACTTAGC
ATATTCATCAGTCATGACAGAGGCACACTCAATATTGGTGATCTCTTCACGGACTTTGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTC
GAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTCCAAATTGCAGTTTGAGTCAATCTTCGCTCGTTTCAAGTTCAAGTTCGAGCTT
TCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAG
TACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCGACTTCAAGTTGAAGGCCTCATTCGCTTCATCTTCAAAGTTTGTGGTTGACGGCCTCGTTCGTTCATCTTCAA
AGTTGACGGCACTTGACGGGCTCGCTTCATCTTCAAAATTGGCGGCAGTTGACGGGCTCGCTTCATCTTCAAAATTGGCGGCAGTTGACGGGCTCGCTTCATCTTCAAAA
TTGGCGGCAGTTGATAGGCTCGCTTCATCTTCAAGATTGGTAGTTGAAGTATGTTAG
Protein sequenceShow/hide protein sequence
MIWTQMAEPNQGGMVIQENPLFGYSTSSSEQAKETSDPDVMSVMMADIGTGEERMAELERKRGSLIQFGTFDPIIVWSQPEAPGNDFPERALYDEDLQENIRQIEDVDGG
WTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNI
DDLLKQRGQSSQAIHLKFLNSSRMSSKFLRVMAKDLAYSSVMTEAHSILVISSRTLVWPLIPLSPRMIVQAVVRVCHSRLHLSQSTSSSFARSKLQFESIFARFKFKFEL
SSLQVLQVQAFIASSTLSSSSRLRSFQVQVRAFLTSSTLSSSSGASLGFDFKLKASFASSSKFVVDGLVRSSSKLTALDGLASSSKLAAVDGLASSSKLAAVDGLASSSK
LAAVDRLASSSRLVVEVC