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Spg010454 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010454
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:10147202..10154641
RNA-Seq ExpressionSpg010454
SyntenySpg010454
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EAY83065.1 hypothetical protein OsI_38284 [Oryza sativa Indica Group]7.5e-1229.07Show/hide
Query:  ELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-------------LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGS
        E   +  ++ W IW+++N+  H + I P+ V  ++IF Y+              +  KQ+    R  +       V  P  W  P  G+ KLN D ++ +
Subjt:  ELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-------------LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGS

Query:  NPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD
        +    G+G + RDS G V  A    + V  +A  AEL    EGI MA+       +VE DCL   NL+  K+
Subjt:  NPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.8e-1336.02Show/hide
Query:  DYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGM
        D  N + ++L A   WAIW D+N   H   +    +R  WI  Y +  S+ Q  K   P  S   SVP  S   W+PP +   K+NSD    S  +S G+
Subjt:  DYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGM

Query:  GLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV
        GLI RD  G++  A + +L +      AE+  I E +++A S    RL+VE DC  AI LV
Subjt:  GLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV

XP_023878301.1 uncharacterized protein LOC111990748 [Quercus suber]4.4e-1232.69Show/hide
Query:  ELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRD
        ++ EL  V+SWAIW ++NK VHN+   P++    W      L     L+D + A S++   P  S   W  PP G +K+N D        +  +G+I RD
Subjt:  ELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRD

Query:  SDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVS
        S+G+V  A   YL   F A   E   + +GI +A  L   R+++E D L  I  ++
Subjt:  SDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVS

XP_023880941.1 uncharacterized protein LOC111993328 [Quercus suber]4.9e-1128.85Show/hide
Query:  ELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDG
        E  AV +W++WN +N   H +        ++ I DYLK  K++ L  SRP        P  S   W PP  G++K+N+D     +    G+G++ R++ G
Subjt:  ELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDG

Query:  IVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD
        ++ GA +  + +   A  +E   + EG+ +A  LG   + +E D L+ I+ +   D
Subjt:  IVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD

XP_030943489.1 uncharacterized protein LOC115968280 [Quercus lobata]8.3e-1130.77Show/hide
Query:  ELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDG
        E+  VM+W+IW ++N+ VH       N    W F       K+ L+D + A S +          W PPP G +K+N D     N  +  +G+I RDS G
Subjt:  ELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDG

Query:  IVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD
        I+  A A+YL  +F+A   E   +  GI +A  +G  ++++E D L  I  ++  +
Subjt:  IVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047863.3e-1336.02Show/hide
Query:  DYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGM
        D  N + ++L A   WAIW D+N   H   +    +R  WI  Y +  S+ Q  K   P  S   SVP  S   W+PP +   K+NSD    S  +S G+
Subjt:  DYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGM

Query:  GLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV
        GLI RD  G++  A + +L +      AE+  I E +++A S    RL+VE DC  AI LV
Subjt:  GLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV

A0A6J1DX30 uncharacterized protein LOC1110248742.6e-1029.14Show/hide
Query:  LVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGI
        L A+  W IWND+N  +H + + P+  + +W+  +L    +  + +  P    N    VQ   +W P      KLN+D       +S   G I RDS   
Subjt:  LVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGI

Query:  VRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV
        +  A +  +    +  +AE+  I EG++ A +     L VE D LLAI L+
Subjt:  VRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLV

A0A803NL40 Uncharacterized protein7.4e-1329.78Show/hide
Query:  NYKASDYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK---LSKKQILKDSRPAISVNQSVP-------VQSPEWWIPPPEGFWKLN
        +Y  +   N EL++++ ++ W IW ++NK +H        V   +   YL+    ++   +  S  + SV Q VP       +  P  W PPP GF+KLN
Subjt:  NYKASDYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK---LSKKQILKDSRPAISVNQSVP-------VQSPEWWIPPPEGFWKLN

Query:  SDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKK
         D ++ S+ S +  G + RD  G V GAF+  LY  ++    E N +   +  A+  G     VE D L+ +N ++KK
Subjt:  SDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKK

A0A803PD29 Uncharacterized protein1.5e-1029.52Show/hide
Query:  YKASDYTNWELQELVAVMSWAIWNDKNKTVHNEGI-PPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPS
        Y +   T  EL+ ++ +M W IW+D+N  +H + I  P+ + SQ   D   L   +   ++    SV  + P  S   W PPPE   K+N D    S  S
Subjt:  YKASDYTNWELQELVAVMSWAIWNDKNKTVHNEGI-PPINVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPS

Query:  SMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVS
         +G+G+I RDS+G V    +  +   + +   E   +F G+  A  L  +   V+ DCL+ +N ++
Subjt:  SMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVS

A2ZKD1 RNase H domain-containing protein3.7e-1229.07Show/hide
Query:  ELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-------------LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGS
        E   +  ++ W IW+++N+  H + I P+ V  ++IF Y+              +  KQ+    R  +       V  P  W  P  G+ KLN D ++ +
Subjt:  ELQELVAVMSWAIWNDKNKTVHNEGIPPINVRSQWIFDYLK-------------LSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGS

Query:  NPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD
        +    G+G + RDS G V  A    + V  +A  AEL    EGI MA+       +VE DCL   NL+  K+
Subjt:  NPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGCERLLVEFDCLLAINLVSKKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATTTCAACCGGCCAAGGGGAGTTCACTTTGGAGATTTGTAGCCCTAATCACAATTGGAGACATCTTGTGGGAGCTTGAGCAAGGACGAGGAACGGGATTCAAGAC
GATAGCTCGTGGAGATCGTGACGGGAACGTGATCTCACAATCCGTTCCACGGCCTGAGGATAGTAGAGAAGATCCAAGTGGTTGTCCAAAAGTCGTTCGTGTGAATTATA
AAGCATCGGATTATACGAATTGGGAGCTCCAAGAGCTGGTAGCTGTTATGAGCTGGGCGATCTGGAATGATAAAAACAAGACGGTTCATAATGAGGGAATACCTCCAATT
AATGTCAGGAGTCAATGGATATTCGATTATCTAAAGCTTTCCAAAAAGCAAATTTTGAAAGATTCTAGACCTGCTATTTCTGTGAATCAATCGGTCCCTGTGCAATCGCC
TGAGTGGTGGATCCCTCCTCCAGAGGGATTTTGGAAATTGAACTCTGATGTAACTTGGGGATCTAATCCTTCTTCAATGGGAATGGGCCTCATATTTAGGGATTCAGATG
GTATTGTGCGTGGGGCATTTGCTTCCTATCTATATGTTGAATTTACGGCTCCCATTGCTGAACTGAATGTAATTTTTGAAGGTATTCGCATGGCAATATCACTGGGGTGT
GAAAGACTATTGGTGGAATTTGATTGCTTGTTGGCCATTAATCTTGTTTCAAAGAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATTTCAACCGGCCAAGGGGAGTTCACTTTGGAGATTTGTAGCCCTAATCACAATTGGAGACATCTTGTGGGAGCTTGAGCAAGGACGAGGAACGGGATTCAAGAC
GATAGCTCGTGGAGATCGTGACGGGAACGTGATCTCACAATCCGTTCCACGGCCTGAGGATAGTAGAGAAGATCCAAGTGGTTGTCCAAAAGTCGTTCGTGTGAATTATA
AAGCATCGGATTATACGAATTGGGAGCTCCAAGAGCTGGTAGCTGTTATGAGCTGGGCGATCTGGAATGATAAAAACAAGACGGTTCATAATGAGGGAATACCTCCAATT
AATGTCAGGAGTCAATGGATATTCGATTATCTAAAGCTTTCCAAAAAGCAAATTTTGAAAGATTCTAGACCTGCTATTTCTGTGAATCAATCGGTCCCTGTGCAATCGCC
TGAGTGGTGGATCCCTCCTCCAGAGGGATTTTGGAAATTGAACTCTGATGTAACTTGGGGATCTAATCCTTCTTCAATGGGAATGGGCCTCATATTTAGGGATTCAGATG
GTATTGTGCGTGGGGCATTTGCTTCCTATCTATATGTTGAATTTACGGCTCCCATTGCTGAACTGAATGTAATTTTTGAAGGTATTCGCATGGCAATATCACTGGGGTGT
GAAAGACTATTGGTGGAATTTGATTGCTTGTTGGCCATTAATCTTGTTTCAAAGAAGGACTGA
Protein sequenceShow/hide protein sequence
MRFQPAKGSSLWRFVALITIGDILWELEQGRGTGFKTIARGDRDGNVISQSVPRPEDSREDPSGCPKVVRVNYKASDYTNWELQELVAVMSWAIWNDKNKTVHNEGIPPI
NVRSQWIFDYLKLSKKQILKDSRPAISVNQSVPVQSPEWWIPPPEGFWKLNSDVTWGSNPSSMGMGLIFRDSDGIVRGAFASYLYVEFTAPIAELNVIFEGIRMAISLGC
ERLLVEFDCLLAINLVSKKD