; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010467 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010467
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold5:12785754..12792710
RNA-Seq ExpressionSpg010467
SyntenySpg010467
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34244.1 hypothetical protein [Cucumis melo subsp. melo]5.4e-3150Show/hide
Query:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT
        + K+F QPR+ +T  E   ++    H +E       +   +          +E+D+S + +QRTSVFDRIKP TTR SVFQR+SM   TEEN+C  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT

Query:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        R  AF+RLS+STSKK R STS FDRLK+TDDQ +R+M  L+ K F E N + K+HS +PS MKR+ SV INTEGSL
Subjt:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-3251.14Show/hide
Query:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT
        + ++F QPRQ +T  E F ++    H KE       +   +          EEVD+S + +QRTSVFDRIKP TTR SVFQR+S+    EENQC  ST T
Subjt:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT

Query:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        R  AF+ LS+STSKK R STS FDRLK+ +DQ +R+M +L+VK F E N + K+HS +PS MKR+ SV INTEGSL
Subjt:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-3144.75Show/hide
Query:  EEKDSQIAQLKSQIENQH----IAESSQTQRSKEF-------------SQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSS
        +E+ +   Q KS    +H    I+   + +R+K+               QPRQ +T  E F ++    H +E     T +   +          EEVD+S
Subjt:  EEKDSQIAQLKSQIENQH----IAESSQTQRSKEF-------------SQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSS

Query:  KKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSN
         + +QRTSVFDRIKP TTR SVFQR+SM    EENQC  ST+ R  AF+RLS+STSKK R STS FDRLK+T+DQ +R+M +L+ K F E N + K+HS 
Subjt:  KKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSN

Query:  IPSHMKRRFSVLINTEGSL
        +PS MKR+ SV INTEGSL
Subjt:  IPSHMKRRFSVLINTEGSL

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-3148.59Show/hide
Query:  QRSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTF
        ++ ++F QPR+ +T  E F ++    H +E       +   +          EEVD+S + +QRTSVFDRIKP TTR SVFQR+SM    EENQC  ST+
Subjt:  QRSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTF

Query:  TRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        TR  AF+RLS+S SKK R STS FDRLK+T+DQ +R+M +L+ K F E N + K++S +PS +KR+ S+ INTEGSL
Subjt:  TRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.4e-3250Show/hide
Query:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT
        + ++F QPRQ +T  E   ++    H +E       +   +          EE+D+S + +QRTSVFDRIKP TTR SVFQR+SM    EENQC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT

Query:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        R  AF+RLS+STSKK R STS FDRLK+T+DQ +R+M  L+ K F E N + K+HS +PSHMKR+ SV INT+GSL
Subjt:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein4.1e-3251.14Show/hide
Query:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT
        + ++F QPRQ +T  E F ++    H KE       +   +          EEVD+S + +QRTSVFDRIKP TTR SVFQR+S+    EENQC  ST T
Subjt:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT

Query:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        R  AF+ LS+STSKK R STS FDRLK+ +DQ +R+M +L+VK F E N + K+HS +PS MKR+ SV INTEGSL
Subjt:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein1.2e-3144.75Show/hide
Query:  EEKDSQIAQLKSQIENQH----IAESSQTQRSKEF-------------SQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSS
        +E+ +   Q KS    +H    I+   + +R+K+               QPRQ +T  E F ++    H +E     T +   +          EEVD+S
Subjt:  EEKDSQIAQLKSQIENQH----IAESSQTQRSKEF-------------SQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSS

Query:  KKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSN
         + +QRTSVFDRIKP TTR SVFQR+SM    EENQC  ST+ R  AF+RLS+STSKK R STS FDRLK+T+DQ +R+M +L+ K F E N + K+HS 
Subjt:  KKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSN

Query:  IPSHMKRRFSVLINTEGSL
        +PS MKR+ SV INTEGSL
Subjt:  IPSHMKRRFSVLINTEGSL

A0A5A7U974 Retrotransposon gag protein4.5e-3148.59Show/hide
Query:  QRSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTF
        ++ ++F QPR+ +T  E F ++    H +E       +   +          EEVD+S + +QRTSVFDRIKP TTR SVFQR+SM    EENQC  ST+
Subjt:  QRSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTF

Query:  TRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        TR  AF+RLS+S SKK R STS FDRLK+T+DQ +R+M +L+ K F E N + K++S +PS +KR+ S+ INTEGSL
Subjt:  TRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

A0A5A7U9V3 Retrotransposon gag protein3.1e-3250Show/hide
Query:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT
        + ++F QPRQ +T  E   ++    H +E       +   +          EE+D+S + +QRTSVFDRIKP TTR SVFQR+SM    EENQC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT

Query:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        R  AF+RLS+STSKK R STS FDRLK+T+DQ +R+M  L+ K F E N + K+HS +PSHMKR+ SV INT+GSL
Subjt:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

E5GCP7 Uncharacterized protein2.6e-3150Show/hide
Query:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT
        + K+F QPR+ +T  E   ++    H +E       +   +          +E+D+S + +QRTSVFDRIKP TTR SVFQR+SM   TEEN+C  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKT---SHKKEKGNFATSYCIHV----------EEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFT

Query:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL
        R  AF+RLS+STSKK R STS FDRLK+TDDQ +R+M  L+ K F E N + K+HS +PS MKR+ SV INTEGSL
Subjt:  RPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKMDNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCATTAAGAGGGAGGATGGGAGACTGGAGAGGAAAAAGAAACTATACAGGGGCGAAGAGAGAAGGGGAATAAACAGGGGCGAGAAGGGGGAAAACGCGAAGAAAAT
GGAAGTAGATAGGAGAGAAAAGATAAGAGAGATGAGAGAGAATGAGACAGAGAGAATGGTTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAG
ATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCG
AAGGAACTCTTCTCCAAAACTTCCCACAAAAAAGAAAAGGGAAACTTTGCAACTTCCTACTGCATCCATGTAGAAGAGGTTGACAGTTCTAAGAAGGGTGAACAAAGGAC
TTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAACAGAAGAAAATCAATGTTCGGCGTCCACCTTCACTC
GACCTTTAGCTTTTCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCCAAAAGAAAGATG
GACAACTTGGAAGTGAAACTTTTCGATGAAGTAAACAGCAACAAAAAGCTTCATAGTAACATCCCGTCACATATGAAGAGGAGGTTCTCTGTTCTCATAAATACAGAAGG
TTCCTTGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCATTTCACTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCT
TACATTGTTCGCTACTGAGTTGTTCCTTCTCCAAGTTCGAAGGTTTTGACATTGCGCTGCTTCGCTGTTTCTTATCCAAGTTTGAAGGTTCTAACGTTGCGCTGCTTCCT
TCTCTAAGTTCGAAGGTTCTCATGCCACGCTGCTTCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCATACTGCGCTGCTATGCTGCTTCCTTCTCCAAGTTCGAAGGTTC
TGACGTTGCGCTGTTTCTCTATTCCTTCTCCAAGTTCGAAGGTTCTTATGTTGCTTCGTTGTTGTTCCTTCTTCAATTTCGAAGTTCTCACGCTGCTACGCTGTTTGTTA
TGCTAGTCTCTCCAAGTTCGAAGGGCGCTGCTACGCTGCCAGTCTCTCCAAGTTCGAAGGGCACTGCTACTCTGTTCGTCCCTTCTCTCTCCAAGTACAAAGGTTCTGAC
GATGCGCTGCTTCCTTCTCCAAGTTTGAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCGAAGGTTTGCACTCTAAGTTCCTTCTCCAAGTTCGAAGGTTC
TCGTGTCACGTCGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGCGTTGTTGCGCTACTACGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTAC
ATTATTCCGTTGTTGCTTCCTTCTCCAACTGTAAAGGAGCCCAAGTGGAAGAGACATCATGTGTCCTTGGGCTGGGGAACGTCGTAGCAACAAAAGTCCAAAGACGTCAA
TTGTCCTTGTACTTATGCTGTAAGACGTTGGACCACTGTAAAGGAGCCCAAGTGGAAGAGACATCATGTGTCCTTGGGTCGGGGAACGTCGTAGCAACAAAAGTCCAAAG
ACGGATCGTCGTAGCAACAAAAGTCCAAAGACGTCAAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGGAAGACGTTGCAGTTGTAAAGGAGCCCAAGTGGAAG
TGACATCATGTGTCCTTGGGCCAGGGAACGTCGTAGCAACAAAAGTCCAAAGACGAGCCCAAGTGGGAGTGACATCATGTGTCCTTGGGCCAGGGAACGTTGTAGCAACA
AAAATTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGGAAGACGTTGGAGCAGTAAAGGAGCCCAAGTGGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCATTAAGAGGGAGGATGGGAGACTGGAGAGGAAAAAGAAACTATACAGGGGCGAAGAGAGAAGGGGAATAAACAGGGGCGAGAAGGGGGAAAACGCGAAGAAAAT
GGAAGTAGATAGGAGAGAAAAGATAAGAGAGATGAGAGAGAATGAGACAGAGAGAATGGTTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAG
ATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGCG
AAGGAACTCTTCTCCAAAACTTCCCACAAAAAAGAAAAGGGAAACTTTGCAACTTCCTACTGCATCCATGTAGAAGAGGTTGACAGTTCTAAGAAGGGTGAACAAAGGAC
TTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAACAGAAGAAAATCAATGTTCGGCGTCCACCTTCACTC
GACCTTTAGCTTTTCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCCAAAAGAAAGATG
GACAACTTGGAAGTGAAACTTTTCGATGAAGTAAACAGCAACAAAAAGCTTCATAGTAACATCCCGTCACATATGAAGAGGAGGTTCTCTGTTCTCATAAATACAGAAGG
TTCCTTGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCATTTCACTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCT
TACATTGTTCGCTACTGAGTTGTTCCTTCTCCAAGTTCGAAGGTTTTGACATTGCGCTGCTTCGCTGTTTCTTATCCAAGTTTGAAGGTTCTAACGTTGCGCTGCTTCCT
TCTCTAAGTTCGAAGGTTCTCATGCCACGCTGCTTCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCATACTGCGCTGCTATGCTGCTTCCTTCTCCAAGTTCGAAGGTTC
TGACGTTGCGCTGTTTCTCTATTCCTTCTCCAAGTTCGAAGGTTCTTATGTTGCTTCGTTGTTGTTCCTTCTTCAATTTCGAAGTTCTCACGCTGCTACGCTGTTTGTTA
TGCTAGTCTCTCCAAGTTCGAAGGGCGCTGCTACGCTGCCAGTCTCTCCAAGTTCGAAGGGCACTGCTACTCTGTTCGTCCCTTCTCTCTCCAAGTACAAAGGTTCTGAC
GATGCGCTGCTTCCTTCTCCAAGTTTGAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCGAAGGTTTGCACTCTAAGTTCCTTCTCCAAGTTCGAAGGTTC
TCGTGTCACGTCGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGCGTTGTTGCGCTACTACGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTAC
ATTATTCCGTTGTTGCTTCCTTCTCCAACTGTAAAGGAGCCCAAGTGGAAGAGACATCATGTGTCCTTGGGCTGGGGAACGTCGTAGCAACAAAAGTCCAAAGACGTCAA
TTGTCCTTGTACTTATGCTGTAAGACGTTGGACCACTGTAAAGGAGCCCAAGTGGAAGAGACATCATGTGTCCTTGGGTCGGGGAACGTCGTAGCAACAAAAGTCCAAAG
ACGGATCGTCGTAGCAACAAAAGTCCAAAGACGTCAAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGGAAGACGTTGCAGTTGTAAAGGAGCCCAAGTGGAAG
TGACATCATGTGTCCTTGGGCCAGGGAACGTCGTAGCAACAAAAGTCCAAAGACGAGCCCAAGTGGGAGTGACATCATGTGTCCTTGGGCCAGGGAACGTTGTAGCAACA
AAAATTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGGAAGACGTTGGAGCAGTAAAGGAGCCCAAGTGGGAGTGA
Protein sequenceShow/hide protein sequence
MRIKREDGRLERKKKLYRGEERRGINRGEKGENAKKMEVDRREKIREMRENETERMVEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQTQRSKEFSQPRQPVTA
KELFSKTSHKKEKGNFATSYCIHVEEVDSSKKGEQRTSVFDRIKPSTTRPSVFQRMSMVATTEENQCSASTFTRPLAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPKRKM
DNLEVKLFDEVNSNKKLHSNIPSHMKRRFSVLINTEGSLKFEGSHALRCSSFSPSSKVLMHFTVVPSLQVRGFLHCSLLSCSFSKFEGFDIALLRCFLSKFEGSNVALLP
SLSSKVLMPRCFVVPSPSLKVLILRCYAASFSKFEGSDVALFLYSFSKFEGSYVASLLFLLQFRSSHAATLFVMLVSPSSKGAATLPVSPSSKGTATLFVPSLSKYKGSD
DALLPSPSLKVLMRYATVPSPSSKVCTLSSFSKFEGSRVTSLRCSFSKFEGSHTALLRYYAASFSKFEGSQVLHYSVVASFSNCKGAQVEETSCVLGLGNVVATKVQRRQ
LSLYLCCKTLDHCKGAQVEETSCVLGSGNVVATKVQRRIVVATKVQRRQKSKDVNCPCTYAGRRCSCKGAQVEVTSCVLGPGNVVATKVQRRAQVGVTSCVLGPGNVVAT
KIPKTSIVLVLMLEDVGAVKEPKWE