; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010487 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010487
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:12411466..12419272
RNA-Seq ExpressionSpg010487
SyntenySpg010487
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.2e-1454.64Show/hide
Query:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        A+A  I K + ES K  + +K+NPL+      S +     +PDV S+MMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAE SQT
Subjt:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.2e-1454.64Show/hide
Query:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        A+A  I K + ES K  + +K+NPL+      S +     +PDV S+MMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAE SQT
Subjt:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.2e-1454.64Show/hide
Query:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        A+A  I K + ES K  + +K+NPL+      S +     +PDV S+MMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAE SQT
Subjt:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.2e-1454.64Show/hide
Query:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        A+A  I K + ES K  + +K+NPL+      S +     +PDV S+MMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAE SQT
Subjt:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.2e-1454.64Show/hide
Query:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        A+A  I K + ES K  + +K+NPL+      S +     +PDV S+MMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAE SQT
Subjt:  AVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

TrEMBL top hitse value%identityAlignment
A0A5A7T5Q9 Ty3-gypsy retrotransposon protein9.3e-1352.33Show/hide
Query:  ESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        ESSK  + +K+NPL+++    S + K    PDVKS+MMAD+  +  M EMERK+NLL+K ++ERD EI  L+ Q+Q RETAE SQT
Subjt:  ESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

A0A5A7TFN2 Ty3-gypsy retrotransposon protein3.2e-1350Show/hide
Query:  VASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        VA RI K + ES K  + +K+N L+++    S + K   +PDVKS+MMAD+  +  M EMERK+N LMKAV+ERD EI   + Q++ RETAE SQT
Subjt:  VASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

A0A5D3BY54 Ty3-gypsy retrotransposon protein6.5e-1451.04Show/hide
Query:  VASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT
        VA  I K + ES K  + +K+NPL+++   +S + K   +PDV S+MMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RETAE SQT
Subjt:  VASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQT

A0A5D3C3J8 Ty3-gypsy retrotransposon protein9.3e-1348.45Show/hide
Query:  VASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQTL
        VA  I K + ES K  + +K+NPL+++    S + K   +PDV S+MMAD+  +  MAEMERK+N LM  V+ERD EI  L+ Q+Q RE  E SQTL
Subjt:  VASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQTL

A0A5D3DXA8 Ty3-gypsy retrotransposon protein4.2e-1345.22Show/hide
Query:  VMHSSMTGCRVMEDHTPLAVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYL
        + HS   G  + E      VA  I K + ES K  + +K+NPL+++    S + K   +PDV SIMMAD+  +  MAEMERK+N LMK V+ER+ EI  L
Subjt:  VMHSSMTGCRVMEDHTPLAVASRISKLIEESSKDRVTVKDNPLFESVVPTSKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYL

Query:  KNQLQNRETAEFSQT
        + Q+  RETAE SQT
Subjt:  KNQLQNRETAEFSQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAGAGGTTCCCATTGGAAAAGGAGGTAAAACTTGGAAAATTGTTGGATTGCTAACCAGCAAGACATCAAAGTTGCTTGAATCAACGATGGAGTTGCCTAATTT
CACTTTCTCTCCAGTGGAGTTGCTTGAATCGAACGATGATGGAGTTCGCTCGCCAGAGGATTGGGGCGGTGGAGGAAATTTTTGGTGCGAGAATTCTTCGGGTAAAATGG
AAATGAAGGAGGCGACAAACCGCCGCCGCTTATTCGTGGATCGCGCCGCCGCCTATTCGTGGATCGCGCCGCCGCTGTCGTTGAGCTGCTACAGCCCAGTTCGCGCCGCC
GCAGCTGCTCCTCGTCGCAGCCGTTCAGTTCGCGCCGTTGCCCAGGTCCTGCAGCCCTCGCCGTCGACATGCCTAGCCGCAGGTCGTCTTCTCTTCGTGCCGCCCCTCCC
TCTTCGTGTCGCTTCTCTCTCTCGGTTCCTCCCTGTTGCGAAGCCAGCCGAGCGCCACCGTTCCAGCATGAGGTTCGTTTTCGAGCATCCTCGCCTCTGTCCAGCGGCGT
TTGGACCCCATTCTGGACCGTTGAAGCATCGCCTAGCCTTGTTGGAAGCTTTCGGCCTCACATATCTCGAGTTGGTGAGGTTTCAGCCTTCCTTGGGTGTTTTTGGACAA
CCCTCTTTTCGTGCGATTTCAGACCTTGGACAACACCTATTTAAGGAGTTTAAGTGTTGTGTTAGGTCGTTCCAGCAAGGTTCAACCCCTGTTTGGGTTCGCTTAGAGCT
TGCTCTTGTGCTTTCCAGTAGCATGGTTGCTTGGCGTAAGCATGTTGAGTTATGGTTAAGCATGATTTTGGTGATGCATTCTAGCATGACGGGATGTCGTGTTATGGAGG
ATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAGGGTTACAGTCAAAGACAACCCGCTGTTCGAATCTGTCGTTCCAACA
TCTAAGCAACCAAAGGATGCACTAAATCCTGATGTGAAGTCCATCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAAT
GAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTTTAGCCAGACCCTTGCTGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAGAGGTTCCCATTGGAAAAGGAGGTAAAACTTGGAAAATTGTTGGATTGCTAACCAGCAAGACATCAAAGTTGCTTGAATCAACGATGGAGTTGCCTAATTT
CACTTTCTCTCCAGTGGAGTTGCTTGAATCGAACGATGATGGAGTTCGCTCGCCAGAGGATTGGGGCGGTGGAGGAAATTTTTGGTGCGAGAATTCTTCGGGTAAAATGG
AAATGAAGGAGGCGACAAACCGCCGCCGCTTATTCGTGGATCGCGCCGCCGCCTATTCGTGGATCGCGCCGCCGCTGTCGTTGAGCTGCTACAGCCCAGTTCGCGCCGCC
GCAGCTGCTCCTCGTCGCAGCCGTTCAGTTCGCGCCGTTGCCCAGGTCCTGCAGCCCTCGCCGTCGACATGCCTAGCCGCAGGTCGTCTTCTCTTCGTGCCGCCCCTCCC
TCTTCGTGTCGCTTCTCTCTCTCGGTTCCTCCCTGTTGCGAAGCCAGCCGAGCGCCACCGTTCCAGCATGAGGTTCGTTTTCGAGCATCCTCGCCTCTGTCCAGCGGCGT
TTGGACCCCATTCTGGACCGTTGAAGCATCGCCTAGCCTTGTTGGAAGCTTTCGGCCTCACATATCTCGAGTTGGTGAGGTTTCAGCCTTCCTTGGGTGTTTTTGGACAA
CCCTCTTTTCGTGCGATTTCAGACCTTGGACAACACCTATTTAAGGAGTTTAAGTGTTGTGTTAGGTCGTTCCAGCAAGGTTCAACCCCTGTTTGGGTTCGCTTAGAGCT
TGCTCTTGTGCTTTCCAGTAGCATGGTTGCTTGGCGTAAGCATGTTGAGTTATGGTTAAGCATGATTTTGGTGATGCATTCTAGCATGACGGGATGTCGTGTTATGGAGG
ATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAGGGTTACAGTCAAAGACAACCCGCTGTTCGAATCTGTCGTTCCAACA
TCTAAGCAACCAAAGGATGCACTAAATCCTGATGTGAAGTCCATCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAAT
GAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTTTAGCCAGACCCTTGCTGCGTGA
Protein sequenceShow/hide protein sequence
MAAEVPIGKGGKTWKIVGLLTSKTSKLLESTMELPNFTFSPVELLESNDDGVRSPEDWGGGGNFWCENSSGKMEMKEATNRRRLFVDRAAAYSWIAPPLSLSCYSPVRAA
AAAPRRSRSVRAVAQVLQPSPSTCLAAGRLLFVPPLPLRVASLSRFLPVAKPAERHRSSMRFVFEHPRLCPAAFGPHSGPLKHRLALLEAFGLTYLELVRFQPSLGVFGQ
PSFRAISDLGQHLFKEFKCCVRSFQQGSTPVWVRLELALVLSSSMVAWRKHVELWLSMILVMHSSMTGCRVMEDHTPLAVASRISKLIEESSKDRVTVKDNPLFESVVPT
SKQPKDALNPDVKSIMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAEFSQTLAA