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Spg010512 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010512
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:31879275..31880885
RNA-Seq ExpressionSpg010512
SyntenySpg010512
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX92970.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]1.1e-0728.78Show/hide
Query:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG
        W+ D  G FSV+SAY L +        S SS++   + W   WK+K+P K+K+        + +  N  P+ E++            +  P  W     G
Subjt:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG

Query:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE
        + K+N D S+  S  +GGIG I+R   GS++ +    +E
Subjt:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE

EEC68026.1 hypothetical protein OsI_35837 [Oryza sativa Indica Group]8.6e-0828.78Show/hide
Query:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG
        W+ D  G FSV+SAY L +        S SS++   + W   WK+K+P K+K+        + +  N+ P+ E++            +  P  W     G
Subjt:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG

Query:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE
        + K+N D S+  S  +GGIG I+R   GS++ +    +E
Subjt:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]4.1e-1029.66Show/hide
Query:  MNEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIK-----LCGANRSPVFTSFGNAS-PSGED-RDAPMSSPRGWLPI
        +++++W+ D KG +SVKS Y+L +Q      PS S     +  W + W  ++P K K     L  A    +  S+     P  +   D  ++S   W   
Subjt:  MNEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIK-----LCGANRSPVFTSFGNAS-PSGED-RDAPMSSPRGWLPI

Query:  PEGYWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLEAFD
        P G++K+N DA+    N+R G+G +IR  +G L+ A + P +  D
Subjt:  PEGYWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLEAFD

XP_023878442.1 uncharacterized protein LOC111990905 [Quercus suber]1.6e-0932.56Show/hide
Query:  NEIIWNCDPKGKFSVKSAYRLGVQFLH-NKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRDAPMSSPRGWLPIPEGYWKM
        +++IW  + KG+F+VKSAY +    +  N+E   S  D     W+N W   LP K+ +C        TS         D   P  S   W+  P+G +K+
Subjt:  NEIIWNCDPKGKFSVKSAYRLGVQFLH-NKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRDAPMSSPRGWLPIPEGYWKM

Query:  NCDASWCNSNRRGGIGWIIRRGDGSLVVA
        N D +  +  R   IG IIR  +G +VVA
Subjt:  NCDASWCNSNRRGGIGWIIRRGDGSLVVA

XP_024196088.1 uncharacterized protein LOC112199282 [Rosa chinensis]3.5e-0931.78Show/hide
Query:  NEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRDAPMSSPRGWLPIPEGYWKMN
        + + W+ D KG+FS KSAY L  + LHN     +S+      WK  W  ++P K+K+               S     R   +     WLP P G+ K N
Subjt:  NEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRDAPMSSPRGWLPIPEGYWKMN

Query:  CDASWCNSNRRGGIGWIIRRGDGSLVVAV
        CD ++  S++ GG+G +IR   G +V  V
Subjt:  CDASWCNSNRRGGIGWIIRRGDGSLVVAV

TrEMBL top hitse value%identityAlignment
A0A2P6QWT3 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein3.9e-0645.61Show/hide
Query:  NEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKL
        +++IW+ D KG+FS KSAYRL +  LH   P  S++ L  + WK  W  K+P KIK+
Subjt:  NEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKL

A0A6J1D5Y4 uncharacterized protein LOC1110179273.5e-0744.83Show/hide
Query:  NEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLC
        +E+IW  D K KFSVKS YRLGV      E   S+++ + ++WK  W+T +P K+K+C
Subjt:  NEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLC

B8BK40 Uncharacterized protein4.2e-0828.78Show/hide
Query:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG
        W+ D  G FSV+SAY L +        S SS++   + W   WK+K+P K+K+        + +  N+ P+ E++            +  P  W     G
Subjt:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG

Query:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE
        + K+N D S+  S  +GGIG I+R   GS++ +    +E
Subjt:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE

Q2R6V8 Retrotransposon protein, putative, unclassified5.5e-0828.78Show/hide
Query:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG
        W+ D  G FSV+SAY L +        S SS++   + W   WK+K+P K+K+        + +  N  P+ E++            +  P  W     G
Subjt:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG

Query:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE
        + K+N D S+  S  +GGIG I+R   GS++ +    +E
Subjt:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE

Q53MP1 Retrotransposon protein, putative, unclassified5.5e-0828.78Show/hide
Query:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG
        W+ D  G FSV+SAY L +        S SS++   + W   WK+K+P K+K+        + +  N  P+ E++            +  P  W     G
Subjt:  WNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRD---------APMSSPRGWLPIPEG

Query:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE
        + K+N D S+  S  +GGIG I+R   GS++ +    +E
Subjt:  YWKMNCDASWCNSNRRGGIGWIIRRGDGSLVVAVVNPLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-0437.04Show/hide
Query:  ASPSGEDRDAPMSSPRGWLPIPEGYWKMNCDASWCNSNRRGGIGWIIRRGDGSL
        A   G       SS   W P P  + K N DA+W   N R GIGW++R   G +
Subjt:  ASPSGEDRDAPMSSPRGWLPIPEGYWKMNCDASWCNSNRRGGIGWIIRRGDGSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGATAATTTGGAACTGTGACCCTAAAGGAAAGTTCTCTGTCAAGAGTGCTTACCGGTTGGGGGTTCAGTTTCTTCATAATAAGGAACCTTCGGGATCAAGTAA
TGACCTCAAGGAAAGGAGATGGAAGAACTACTGGAAAACCAAGCTACCTCCCAAGATTAAATTGTGTGGAGCAAACCGGAGTCCAGTGTTCACCTCTTTCGGGAATGCAA
GTCCGAGTGGCGAAGACCGTGATGCTCCAATGTCGAGTCCGAGAGGTTGGCTTCCAATCCCAGAAGGATACTGGAAGATGAACTGTGATGCCTCGTGGTGTAACTCCAAT
CGACGAGGAGGAATAGGCTGGATTATCCGAAGAGGGGATGGTTCGCTGGTGGTTGCAGTTGTTAACCCTTTGGAAGCCTTTGATGGCTTGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAGATAATTTGGAACTGTGACCCTAAAGGAAAGTTCTCTGTCAAGAGTGCTTACCGGTTGGGGGTTCAGTTTCTTCATAATAAGGAACCTTCGGGATCAAGTAA
TGACCTCAAGGAAAGGAGATGGAAGAACTACTGGAAAACCAAGCTACCTCCCAAGATTAAATTGTGTGGAGCAAACCGGAGTCCAGTGTTCACCTCTTTCGGGAATGCAA
GTCCGAGTGGCGAAGACCGTGATGCTCCAATGTCGAGTCCGAGAGGTTGGCTTCCAATCCCAGAAGGATACTGGAAGATGAACTGTGATGCCTCGTGGTGTAACTCCAAT
CGACGAGGAGGAATAGGCTGGATTATCCGAAGAGGGGATGGTTCGCTGGTGGTTGCAGTTGTTAACCCTTTGGAAGCCTTTGATGGCTTGATCTAA
Protein sequenceShow/hide protein sequence
MNEIIWNCDPKGKFSVKSAYRLGVQFLHNKEPSGSSNDLKERRWKNYWKTKLPPKIKLCGANRSPVFTSFGNASPSGEDRDAPMSSPRGWLPIPEGYWKMNCDASWCNSN
RRGGIGWIIRRGDGSLVVAVVNPLEAFDGLI