; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010539 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010539
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionregulation of nuclear pre-mRNA domain-containing protein 1B-like
Genome locationscaffold5:11038103..11039503
RNA-Seq ExpressionSpg010539
SyntenySpg010539
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596197.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. sororia]1.4e-1590.91Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

KAG7027736.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-1590.91Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

XP_022939586.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata]1.4e-1590.91Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

XP_022971617.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita maxima]1.4e-1590.91Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

XP_023539267.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo]3.1e-1589.09Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATR+SLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

TrEMBL top hitse value%identityAlignment
A0A6J1DF20 regulation of nuclear pre-mRNA domain-containing protein 1B-like5.8e-1589.09Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQE+VIQQCIGQLE+VEATR SLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

A0A6J1FGC3 regulation of nuclear pre-mRNA domain-containing protein 1B-like6.8e-1690.91Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

A0A6J1I2G4 regulation of nuclear pre-mRNA domain-containing protein 1B-like6.8e-1690.91Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENV+QQCIGQLE+VEATRASLVSLL+EALQDQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

A0A6J1J460 actin cytoskeleton-regulatory complex protein PAN1-like isoform X28.3e-1487.27Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENVIQ+CI QLE+VEATRASLVSLL+EAL DQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

A0A6J1J690 regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X18.3e-1487.27Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        +SALLD+LQEQENVIQ+CI QLE+VEATRASLVSLL+EAL DQESKLELVRNQLQ
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26990.1 ENTH/VHS family protein7.4e-0754.72Show/hide
Query:  ALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        A++ ELQ Q  +++ CI QL  +E +R SL+S L EALQ+QE KLE VRN LQ
Subjt:  ALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

AT5G10060.1 ENTH/VHS family protein1.4e-0541.82Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        + +L  EL+E+E +++QCI +L++V+ +R+SLV+ L +AL++QES+L+ ++ Q+Q
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

AT5G65180.1 ENTH/VHS family protein2.2e-0645.45Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        + +L  EL+E+EN+++Q + +L++VE +R SLV+ L EAL++QES+LE +++Q+Q
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ

AT5G65180.2 ENTH/VHS family protein2.2e-0645.45Show/hide
Query:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ
        + +L  EL+E+EN+++Q + +L++VE +R SLV+ L EAL++QES+LE +++Q+Q
Subjt:  QSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTCACCAAAGAAATACTTGCAAATGGATTATTGTTTAAATGGAAGTGATAAAGTGTTAGCTGACGGTTTTGTAGATGAGAAATGGGCTAGTTTTGATTTTCTTTT
TCATCTTCATTGGCACAATCTTTTATCTCAGTCTGCATTGCTGGACGAACTTCAAGAGCAGGAAAATGTAATTCAACAATGTATTGGGCAACTCGAAACTGTTGAGGCAA
CTAGGGCTTCTTTGGTTTCCTTGCTTCTTGAAGCGCTTCAGGACCAAGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGGATAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATTCACCAAAGAAATACTTGCAAATGGATTATTGTTTAAATGGAAGTGATAAAGTGTTAGCTGACGGTTTTGTAGATGAGAAATGGGCTAGTTTTGATTTTCTTTT
TCATCTTCATTGGCACAATCTTTTATCTCAGTCTGCATTGCTGGACGAACTTCAAGAGCAGGAAAATGTAATTCAACAATGTATTGGGCAACTCGAAACTGTTGAGGCAA
CTAGGGCTTCTTTGGTTTCCTTGCTTCTTGAAGCGCTTCAGGACCAAGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGGATAACTAG
Protein sequenceShow/hide protein sequence
MHSPKKYLQMDYCLNGSDKVLADGFVDEKWASFDFLFHLHWHNLLSQSALLDELQEQENVIQQCIGQLETVEATRASLVSLLLEALQDQESKLELVRNQLQDN