; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010540 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010540
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionregulation of nuclear pre-mRNA domain-containing protein 1B-like
Genome locationscaffold5:11020773..11032826
RNA-Seq ExpressionSpg010540
SyntenySpg010540
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596197.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3797.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

KAG7027736.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3797.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

XP_022939586.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata]1.5e-3797.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

XP_022971617.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita maxima]1.5e-3797.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

XP_023539267.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo]1.5e-3797.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

TrEMBL top hitse value%identityAlignment
A0A1S3B7H0 regulation of nuclear pre-mRNA domain-containing protein 1B-like1.7e-3696.55Show/hide
Query:  MLGKNPP--PLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPP  PLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLN SLAQG
Subjt:  MLGKNPP--PLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

A0A5D3DPK3 Regulation of nuclear pre-mRNA domain-containing protein 1B-like1.7e-3696.55Show/hide
Query:  MLGKNPP--PLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPP  PLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLN SLAQG
Subjt:  MLGKNPP--PLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

A0A6J1DF20 regulation of nuclear pre-mRNA domain-containing protein 1B-like1.2e-3797.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNED ALNNCSSATHHLNQIEEDLNA+LAQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

A0A6J1FGC3 regulation of nuclear pre-mRNA domain-containing protein 1B-like7.1e-3897.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

A0A6J1I2G4 regulation of nuclear pre-mRNA domain-containing protein 1B-like7.1e-3897.65Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG
        MLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNAS+AQG
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.7e-0529.73Show/hide
Query:  DKVSWSLEGSGIYSARFLFQKIT----KTSPKINTTTSNL-----IWKHKRPKKVKVFLWSLAYRSLNIDERLQMKFKHWTLSPSACRLCIKDEESLDHL
        DK+ W+   +G Y+ R  +  +T       P IN    ++     IW      K+K FLW    ++L   ERL    +   + PS C  C ++ ES++H 
Subjt:  DKVSWSLEGSGIYSARFLFQKIT----KTSPKINTTTSNL-----IWKHKRPKKVKVFLWSLAYRSLNIDERLQMKFKHWTLSPSACRLCIKDEESLDHL

Query:  FIHCDFAWKAW
           C FA  AW
Subjt:  FIHCDFAWKAW

AT5G10060.1 ENTH/VHS family protein3.2e-0639.24Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLA-VGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDL
        MLG++ P     + K     K  KR++ S R KLA  GGV EKI +A+  V+ E+ NE+A +N C SA   + ++E+D+
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLA-VGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDL

AT5G65180.1 ENTH/VHS family protein4.4e-0838.46Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDL
        ML +  PP    + K     K  KRD+ S + KL+ GGV EKI++AF  V  E+ NE+  +N C SA   + ++E+D+
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDL

AT5G65180.2 ENTH/VHS family protein4.4e-0838.46Show/hide
Query:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDL
        ML +  PP    + K     K  KRD+ S + KL+ GGV EKI++AF  V  E+ NE+  +N C SA   + ++E+D+
Subjt:  MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGGTAAAAATCCACCTCCATTACCCAGCAGCAATGGGAAGAGTTCAAATCCTATAAAAATAGTGAAGAGGGATGCCCACTCTGTGAGAATTAAACTGGCTGTTGG
AGGTGTTCCAGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATCTAAATGAAGATGCTGCTCTGAACAACTGTAGTTCTGCTACTCATCATCTGAATCAAA
TTGAGGAAGATTTAAATGCCTCCCTAGCTCAAGGTATACTCAGTAAGTATACATGCATGAGGATACCGAATCATGAGATAAGGCATTTGGGTGCCTTTGTCATGGTTAAG
GTCATGCCTATTGATGACAGATGGTGTGATAACCAGCCCCTCCAACAAAGCTTCCCAGACCTGTACTTAGTTTCCAGCAAGAAAGATGCTTTGGATGCTGACGGTTGGGA
CAGTGGGCATCAGTCGTGGAATTTAGCTTTTAGCTTATTTGACAGAGAGCTTAGCAGTTGGGTGGCTATGGTGGAAAAACTTAAGGGAATTCACCTTGGTACTGAATCAG
ACAAGGTCAGTTGGTCACTTGAAGGGTCTGGCATATACTCGGCAAGGTTCCTATTCCAGAAAATCACTAAGACTTCACCTAAAATCAATACAACTACCAGCAACCTGATA
TGGAAGCACAAAAGGCCGAAGAAAGTCAAAGTCTTTTTGTGGTCTTTAGCTTATCGGAGCCTTAACATTGATGAGAGACTCCAAATGAAATTCAAACATTGGACTCTCTC
CCCCTCAGCATGCAGACTATGTATTAAAGATGAAGAAAGCTTAGACCACTTATTTATCCATTGTGATTTTGCTTGGAAGGCGTGGAGCTTTATTGCAAGGCTGCTGGGCA
TTTCTTTTTGCCTCCCCAAAAAAATTGATGAATGGCTGTTTGAAGGTTTAGTAGCTTGGAATTTGAAGAGGAAGGCTAAGGTGGTTGCGAGTTGTGCTTTTAGGGCAACT
TGTGAATTTTGTGGAAGGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGGTAAAAATCCACCTCCATTACCCAGCAGCAATGGGAAGAGTTCAAATCCTATAAAAATAGTGAAGAGGGATGCCCACTCTGTGAGAATTAAACTGGCTGTTGG
AGGTGTTCCAGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATCTAAATGAAGATGCTGCTCTGAACAACTGTAGTTCTGCTACTCATCATCTGAATCAAA
TTGAGGAAGATTTAAATGCCTCCCTAGCTCAAGGTATACTCAGTAAGTATACATGCATGAGGATACCGAATCATGAGATAAGGCATTTGGGTGCCTTTGTCATGGTTAAG
GTCATGCCTATTGATGACAGATGGTGTGATAACCAGCCCCTCCAACAAAGCTTCCCAGACCTGTACTTAGTTTCCAGCAAGAAAGATGCTTTGGATGCTGACGGTTGGGA
CAGTGGGCATCAGTCGTGGAATTTAGCTTTTAGCTTATTTGACAGAGAGCTTAGCAGTTGGGTGGCTATGGTGGAAAAACTTAAGGGAATTCACCTTGGTACTGAATCAG
ACAAGGTCAGTTGGTCACTTGAAGGGTCTGGCATATACTCGGCAAGGTTCCTATTCCAGAAAATCACTAAGACTTCACCTAAAATCAATACAACTACCAGCAACCTGATA
TGGAAGCACAAAAGGCCGAAGAAAGTCAAAGTCTTTTTGTGGTCTTTAGCTTATCGGAGCCTTAACATTGATGAGAGACTCCAAATGAAATTCAAACATTGGACTCTCTC
CCCCTCAGCATGCAGACTATGTATTAAAGATGAAGAAAGCTTAGACCACTTATTTATCCATTGTGATTTTGCTTGGAAGGCGTGGAGCTTTATTGCAAGGCTGCTGGGCA
TTTCTTTTTGCCTCCCCAAAAAAATTGATGAATGGCTGTTTGAAGGTTTAGTAGCTTGGAATTTGAAGAGGAAGGCTAAGGTGGTTGCGAGTTGTGCTTTTAGGGCAACT
TGTGAATTTTGTGGAAGGAAATAA
Protein sequenceShow/hide protein sequence
MLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQGILSKYTCMRIPNHEIRHLGAFVMVK
VMPIDDRWCDNQPLQQSFPDLYLVSSKKDALDADGWDSGHQSWNLAFSLFDRELSSWVAMVEKLKGIHLGTESDKVSWSLEGSGIYSARFLFQKITKTSPKINTTTSNLI
WKHKRPKKVKVFLWSLAYRSLNIDERLQMKFKHWTLSPSACRLCIKDEESLDHLFIHCDFAWKAWSFIARLLGISFCLPKKIDEWLFEGLVAWNLKRKAKVVASCAFRAT
CEFCGRK