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Spg010561 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010561
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationscaffold5:12546180..12546725
RNA-Seq ExpressionSpg010561
SyntenySpg010561
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0070449 - elongin complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582213.1 hypothetical protein SDJN03_22215, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3954.49Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+PVTNKLWK FYERKFG D  + V+ERM+  KE+FRWKQ+YE KMK L++K  E  +R IQN +
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
         EK RKQSRQ++I E+                 + KK +   +VC VSS +N KRS+        +   SK+LKK+++
Subjt:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

KAG6582214.1 hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia]4.5e-4155.06Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVGQ DL+FLEHILPHCTVDQLMH+E CSKGRDL+PVTNKLWK FYE+KFG+D  + V+ERM+  KE+FRWKQ+YE KMKEL++K  E  +R IQN +
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
         EK RKQSRQ++I E+                 + KK K + ++C VSS +N KRS+ G          SK+LKKA++
Subjt:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

KAG6582215.1 40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. sororia]7.6e-4156.98Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+PVTNKLWK FYERKFG D  + V+ERM+  KE+FRWKQ+YE KMK L++K  E  +R IQN +
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILEV-PSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
         EKARKQSRQ++I E+ PS               + KK +   +VC VSS +N KRS+ G          SK+LKKA++
Subjt:  KEKARKQSRQIQILEV-PSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]3.7e-4357.3Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+P+TNKLWK FYERKFGKDD + VV+RM+  KE+FRWKQ+YE K+KEL+ K  E  +R I+N Q
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
         EKARKQSRQ++I E+                 + KK K   +VC VSS +N KRS+ G          SK+LKKA++
Subjt:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]3.4e-4156.99Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVG TDL  LE ILPHCTVDQLMH+E  SKGRDL+PVT+KLWKNFYE+KFGK+D+D V+++M+ KKE+F+WKQLYEAKM+ L+KK  E   R  QN Q
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILE-VPSLRNKKGRNFA-------KTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
        KE ARKQSR+I   E V S  NKK R+          T   + KK  REAQ+C VSS         G+   G  T +SK+LKKAKR
Subjt:  KEKARKQSRQIQILE-VPSLRNKKGRNFA-------KTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

TrEMBL top hitse value%identityAlignment
A0A6J1G8K1 transcription elongation factor B polypeptide 3 isoform X23.8e-3861.49Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVG+TDL  LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FG+++T+ V ERMQ+KK  FRW QLYEAKMK+++K E E+ +R+ Q+Y 
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQIL-EVPSLRNKK------GRNFAKTGGNLSKKAKRE
        KE ARKQSRQIQI  +VP   NK+      G N   T   L KK+K E
Subjt:  KEKARKQSRQIQIL-EVPSLRNKK------GRNFAKTGGNLSKKAKRE

A0A6J1G8W9 transcription elongation factor B polypeptide 3 isoform X15.0e-3861.07Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVG+TDL  LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FG+++T+ V ERMQ+KK  FRW QLYEAKMK+++K E E+ +R+ Q+Y 
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQIL-EVPSLRNKK-------GRNFAKTGGNLSKKAKRE
        KE ARKQSRQIQI  +VP   NK+       G N   T   L KK+K E
Subjt:  KEKARKQSRQIQIL-EVPSLRNKK-------GRNFAKTGGNLSKKAKRE

A0A6J1I4W9 transcription elongation factor B polypeptide 3 isoform X25.0e-3861.49Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVG+TDL  LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FG++ T+ V ERMQ+KK  FRW QLYEAKMK+++K E E+ +R+ Q+Y 
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQIL-EVPSLRNKK------GRNFAKTGGNLSKKAKRE
        KE ARKQSRQIQI  +VP   NK+      G N   T   L KK+K E
Subjt:  KEKARKQSRQIQIL-EVPSLRNKK------GRNFAKTGGNLSKKAKRE

A0A6J1IR58 uncharacterized protein LOC1114792521.8e-4357.3Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+P+TNKLWK FYERKFGKDD + VV+RM+  KE+FRWKQ+YE K+KEL+ K  E  +R I+N Q
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
         EKARKQSRQ++I E+                 + KK K   +VC VSS +N KRS+ G          SK+LKKA++
Subjt:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

A0A6J1ITM2 uncharacterized protein LOC1114792437.7e-3954.49Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ
        +GDVGQTDL+FLEHILPHCTV+QLM +E  SKGRDL+PVTNKLWK FYERKFGKD  + V+E M + KE+F+WKQ+YE K+KEL++K  E  +R IQN Q
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQ

Query:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR
         EKARKQSRQ++I E+                 + KK+K   + C VSS  N KRS+ G          SK+LKKA++
Subjt:  KEKARKQSRQIQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).3.8e-2240.14Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQ-QKKETFRWKQLYEAKMKELDKKERESGERLIQNY
        +G VG  D   LE IL HCT++QL H+E  +   DLSP+T+K WK FY++ +G++D   ++E ++  K   F+W+ LYE K+  + +KE+E G RL + Y
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQ-QKKETFRWKQLYEAKMKELDKKERESGERLIQNY

Query:  QKEKARKQSRQIQILE--VPSLR-----NKKGRNFAKTGGNLSKKAK
        + E  RKQSRQ ++     PS R     +  G N      N+ KKAK
Subjt:  QKEKARKQSRQIQILE--VPSLR-----NKKGRNFAKTGGNLSKKAK

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).3.8e-2240.14Show/hide
Query:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQ-QKKETFRWKQLYEAKMKELDKKERESGERLIQNY
        +G VG  D   LE IL HCT++QL H+E  +   DLSP+T+K WK FY++ +G++D   ++E ++  K   F+W+ LYE K+  + +KE+E G RL + Y
Subjt:  MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQ-QKKETFRWKQLYEAKMKELDKKERESGERLIQNY

Query:  QKEKARKQSRQIQILE--VPSLR-----NKKGRNFAKTGGNLSKKAK
        + E  RKQSRQ ++     PS R     +  G N      N+ KKAK
Subjt:  QKEKARKQSRQIQILE--VPSLR-----NKKGRNFAKTGGNLSKKAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATGTCGGCCAAACCGATTTAGATTTTCTAGAGCACATTTTGCCACATTGCACTGTTGATCAATTGATGCATGTGGAGAAATGTTCAAAGGGAAGAGATCTCAG
TCCAGTAACCAACAAATTGTGGAAAAATTTCTACGAAAGAAAGTTCGGGAAAGATGATACTGATTTTGTCGTTGAGAGGATGCAGCAGAAAAAAGAGACATTTCGATGGA
AGCAATTGTATGAAGCGAAGATGAAGGAGTTGGACAAGAAGGAGAGGGAGAGTGGAGAGCGATTGATACAAAACTACCAGAAAGAAAAAGCTCGAAAACAAAGTCGTCAA
ATACAGATTCTTGAGGTTCCCTCTTTGAGGAATAAGAAAGGAAGAAACTTTGCAAAAACAGGTGGCAACCTCTCCAAGAAGGCAAAGAGAGAAGCACAAGTTTGTGGGGT
TTCCTCTTTGAGCAATAAGAAACGAAGCTTTGAAGGAAGTGTTGGATTTGGATGTAATACGAATAAGAGCAAGTTGTTGAAGAAGGCAAAGAGAGCAGTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATGTCGGCCAAACCGATTTAGATTTTCTAGAGCACATTTTGCCACATTGCACTGTTGATCAATTGATGCATGTGGAGAAATGTTCAAAGGGAAGAGATCTCAG
TCCAGTAACCAACAAATTGTGGAAAAATTTCTACGAAAGAAAGTTCGGGAAAGATGATACTGATTTTGTCGTTGAGAGGATGCAGCAGAAAAAAGAGACATTTCGATGGA
AGCAATTGTATGAAGCGAAGATGAAGGAGTTGGACAAGAAGGAGAGGGAGAGTGGAGAGCGATTGATACAAAACTACCAGAAAGAAAAAGCTCGAAAACAAAGTCGTCAA
ATACAGATTCTTGAGGTTCCCTCTTTGAGGAATAAGAAAGGAAGAAACTTTGCAAAAACAGGTGGCAACCTCTCCAAGAAGGCAAAGAGAGAAGCACAAGTTTGTGGGGT
TTCCTCTTTGAGCAATAAGAAACGAAGCTTTGAAGGAAGTGTTGGATTTGGATGTAATACGAATAAGAGCAAGTTGTTGAAGAAGGCAAAGAGAGCAGTGGTTTAG
Protein sequenceShow/hide protein sequence
MGDVGQTDLDFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDDTDFVVERMQQKKETFRWKQLYEAKMKELDKKERESGERLIQNYQKEKARKQSRQ
IQILEVPSLRNKKGRNFAKTGGNLSKKAKREAQVCGVSSLSNKKRSFEGSVGFGCNTNKSKLLKKAKRAVV