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Spg010565 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010565
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA topoisomerase
Genome locationscaffold5:9209980..9216746
RNA-Seq ExpressionSpg010565
SyntenySpg010565
Gene Ontology termsGO:0006265 - DNA topological change (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003917 - DNA topoisomerase type I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000380 - DNA topoisomerase, type IA
IPR013497 - DNA topoisomerase, type IA, central
IPR013824 - DNA topoisomerase, type IA, central region, subdomain 1
IPR023405 - DNA topoisomerase, type IA, core domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7834128.1 DNA topoisomerase 3-alpha isoform X1 [Senna tora]4.7e-2970.19Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + ++   LDV+ Y S+  + +    +G   F+PTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

XP_025615776.1 DNA topoisomerase 3-alpha isoform X2 [Arachis hypogaea]6.2e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

XP_025615779.1 DNA topoisomerase 3-alpha isoform X3 [Arachis hypogaea]6.2e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

XP_025672469.1 DNA topoisomerase 3-alpha [Arachis hypogaea]6.2e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

XP_038904102.1 DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida]6.2e-2993.15Show/hide
Query:  LDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI
        L FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Subjt:  LDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI

TrEMBL top hitse value%identityAlignment
A0A0A0LBG7 DNA topoisomerase3.9e-2988.16Show/hide
Query:  IGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI
        +    FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E  V+
Subjt:  IGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI

A0A444XXP0 DNA topoisomerase3.0e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

A0A444XXP6 DNA topoisomerase3.0e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

A0A445C164 DNA topoisomerase3.0e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

A0A6P4BYM4 DNA topoisomerase3.0e-2971.15Show/hide
Query:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +G + +    LDV+ Y S+    L    +G   FVPTTLTLDSGVTRPPPLLSEADLL+CMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL E
Subjt:  NGLLNVSHTLLDVF-YRSF--NRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVI
          V+
Subjt:  NRVI

SwissProt top hitse value%identityAlignment
C7J0A2 DNA topoisomerase 3-alpha1.1e-2880.25Show/hide
Query:  LQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI
        L   IIG   FVPTTLTLDSG+TRPPPLL+EADLL CMDK GIGTDATMHDHIKKLLDR YATKDANTRF+PTNL E  V+
Subjt:  LQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI

O70157 DNA topoisomerase 3-alpha2.5e-0937.61Show/hide
Query:  NGLLNVSHTLLDVF---YRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +GL+ ++   LDV+   + S   L     GS  F P+T+ +  G T PP LL+EADL++ M+K GIGTDAT  +HI+ +  R Y    ++ RF P +L  
Subjt:  NGLLNVSHTLLDVF---YRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVIHSYSS
          ++  Y S
Subjt:  NRVIHSYSS

Q13472 DNA topoisomerase 3-alpha5.7e-0937.61Show/hide
Query:  NGLLNVSHTLLDVF---YRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE
        +GL+ ++   LDV+   + S   L     GS  F P+T+ +  G T PP LL+EADL++ M+K GIGTDAT  +HI+ +  R Y     + RF P +L  
Subjt:  NGLLNVSHTLLDVF---YRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSE

Query:  NRVIHSYSS
          ++  Y S
Subjt:  NRVIHSYSS

Q8T2T7 DNA topoisomerase 31.9e-0944.29Show/hide
Query:  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRV
        F P  + L  G T  P  ++EA+LL+ MD   IGTDATM  HI+ + DRFY  K+ + +F P+NL  + V
Subjt:  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRV

Q9LVP1 DNA topoisomerase 3-alpha1.2e-2784.51Show/hide
Query:  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI
        F+PTTLTLD+ VTRPPPLL EADLLSCMDK GIGTDATMHDHIKKLLDR YATKDANTRF+PTNL E  V+
Subjt:  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI

Arabidopsis top hitse value%identityAlignment
AT2G32000.1 DNA topoisomerase, type IA, core6.0e-0641.38Show/hide
Query:  LDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL
        L  G T PP  L+E++L+S M+K GIGTDA++  HI  + +R Y    +  +  PT L
Subjt:  LDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL

AT2G32000.2 DNA topoisomerase, type IA, core6.0e-0641.38Show/hide
Query:  LDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL
        L  G T PP  L+E++L+S M+K GIGTDA++  HI  + +R Y    +  +  PT L
Subjt:  LDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNL

AT5G63920.1 topoisomerase 3alpha8.6e-2984.51Show/hide
Query:  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI
        F+PTTLTLD+ VTRPPPLL EADLLSCMDK GIGTDATMHDHIKKLLDR YATKDANTRF+PTNL E  V+
Subjt:  FVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAACTTCATTTCTGTTTTCTTGGGTGTTTCTTGCTCCAGCCACCAACCTGTCTTGGTTTTCTTGGGGATTTCTTGGGTTTATTGCTATTCTGTTGTCTCCCA
AGTTTTGTTGATTTGTTGCCAGTGTACTCATCTGTTGTGTAAGTTGCCTAATGGACTGTTGAATGTTAGTCACACTCTTCTTGATGTCTTCTACCGAAGTTTCAACCGAC
TGCAAGCGTCGATCATAGGTTCTCTGGACTTTGTTCCAACAACATTGACTCTTGATTCAGGAGTCACGAGACCACCCCCCCTTCTGAGTGAAGCTGATTTGCTTTCTTGT
ATGGACAAGGAGGGAATTGGTACAGATGCAACAATGCATGATCACATCAAGAAGCTGTTAGATAGATTTTATGCAACAAAGGATGCAAACACTCGCTTCACACCAACTAA
CCTATCTGAAAACAGAGTTATTCACTCTTATTCCTCTCATATTGATTCTGATGATGATTCAGTTGGTATTAGTAGTGTTGAGTTTGAAAATCAGTGTTTGAATGTTGAAA
ATAATGGATCATTGGAGCAAGATTCCCTCGTTGTGGCTTTTGATTGGATTTTTCAGGATAATGGAGTTGTCTCTAAAGTTCAGTTGAATACCTGTGATGTTTTGGCAACA
TCTTTAGTTTCTGCTCCAAGCAAATTTTCCTCACTTATTGAAGGTTGTGACATTAAGTTGAAGGAAATTCATCCATTTTTACCTCCTGTTATTGAAAGCGAACAATTCCA
TGTGGGGAAAGGCTTTGATGTTTACTTGTGGGAAGACACTTGGGTCGGCGATAAACCTTTATGTATCTTATTCCCTCGTCTCTATCGTCTGTTAGATAAGAGGTTGCATT
CGGTGGCTTCTGTGTTGCCTTCTCCTGACCCTGTTTCCTCGATTTCTCTGGGTTTTCGTCGCCCTCTTTCGGATAGGGAGGCGATAGATGTGGCAGTCCTCCTTTATATT
CTTCGAGATCAGTTTATTCATTATAGGAGGAGGGATATAAGAGGTGAGGCTCTGGTAATGGGATATGACGACATGGGTAAACGATCAATAATGTATGAAGCTCAGAAGGA
GAGGAATTCTTTTGGCACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAACTTCATTTCTGTTTTCTTGGGTGTTTCTTGCTCCAGCCACCAACCTGTCTTGGTTTTCTTGGGGATTTCTTGGGTTTATTGCTATTCTGTTGTCTCCCA
AGTTTTGTTGATTTGTTGCCAGTGTACTCATCTGTTGTGTAAGTTGCCTAATGGACTGTTGAATGTTAGTCACACTCTTCTTGATGTCTTCTACCGAAGTTTCAACCGAC
TGCAAGCGTCGATCATAGGTTCTCTGGACTTTGTTCCAACAACATTGACTCTTGATTCAGGAGTCACGAGACCACCCCCCCTTCTGAGTGAAGCTGATTTGCTTTCTTGT
ATGGACAAGGAGGGAATTGGTACAGATGCAACAATGCATGATCACATCAAGAAGCTGTTAGATAGATTTTATGCAACAAAGGATGCAAACACTCGCTTCACACCAACTAA
CCTATCTGAAAACAGAGTTATTCACTCTTATTCCTCTCATATTGATTCTGATGATGATTCAGTTGGTATTAGTAGTGTTGAGTTTGAAAATCAGTGTTTGAATGTTGAAA
ATAATGGATCATTGGAGCAAGATTCCCTCGTTGTGGCTTTTGATTGGATTTTTCAGGATAATGGAGTTGTCTCTAAAGTTCAGTTGAATACCTGTGATGTTTTGGCAACA
TCTTTAGTTTCTGCTCCAAGCAAATTTTCCTCACTTATTGAAGGTTGTGACATTAAGTTGAAGGAAATTCATCCATTTTTACCTCCTGTTATTGAAAGCGAACAATTCCA
TGTGGGGAAAGGCTTTGATGTTTACTTGTGGGAAGACACTTGGGTCGGCGATAAACCTTTATGTATCTTATTCCCTCGTCTCTATCGTCTGTTAGATAAGAGGTTGCATT
CGGTGGCTTCTGTGTTGCCTTCTCCTGACCCTGTTTCCTCGATTTCTCTGGGTTTTCGTCGCCCTCTTTCGGATAGGGAGGCGATAGATGTGGCAGTCCTCCTTTATATT
CTTCGAGATCAGTTTATTCATTATAGGAGGAGGGATATAAGAGGTGAGGCTCTGGTAATGGGATATGACGACATGGGTAAACGATCAATAATGTATGAAGCTCAGAAGGA
GAGGAATTCTTTTGGCACATGA
Protein sequenceShow/hide protein sequence
MDSNFISVFLGVSCSSHQPVLVFLGISWVYCYSVVSQVLLICCQCTHLLCKLPNGLLNVSHTLLDVFYRSFNRLQASIIGSLDFVPTTLTLDSGVTRPPPLLSEADLLSC
MDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLSENRVIHSYSSHIDSDDDSVGISSVEFENQCLNVENNGSLEQDSLVVAFDWIFQDNGVVSKVQLNTCDVLAT
SLVSAPSKFSSLIEGCDIKLKEIHPFLPPVIESEQFHVGKGFDVYLWEDTWVGDKPLCILFPRLYRLLDKRLHSVASVLPSPDPVSSISLGFRRPLSDREAIDVAVLLYI
LRDQFIHYRRRDIRGEALVMGYDDMGKRSIMYEAQKERNSFGT