; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010582 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010582
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold5:10602473..10608672
RNA-Seq ExpressionSpg010582
SyntenySpg010582
Gene Ontology termsNA
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-1227.41Show/hide
Query:  MAGADKHPKHIWTRQDEAKLVECLDEL-------------------------------------------PHSSAKGLLNKPFPHYEELAFVFGKDRARG
        MA + +  KH WT+++EAKLVECL EL                                            H +AKGLL+K FP+Y++L++VFG D A G
Subjt:  MAGADKHPKHIWTRQDEAKLVECLDEL-------------------------------------------PHSSAKGLLNKPFPHYEELAFVFGKDRARG

Query:  SGCTVPAEQADN-------------THEDDEGDNNFQGAPTSRPSTTG-----------SSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQ
        +     A+   N             +H  D      QG   S     G            S   KR R S   E ++++  +      Q   I DWP  +
Subjt:  SGCTVPAEQADN-------------THEDDEGDNNFQGAPTSRPSTTG-----------SSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQ

Query:  DAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL
         A E + R  V + L   P+L   +R  LM+ILF   +      S+P  L+L +   LL
Subjt:  DAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-1634.52Show/hide
Query:  MAGADKHPKHIWTRQDEAKLVECLDELPHSSAKGLLNKPFPHYEELAFVFGKDRAR----------GSGCTVPAEQADNTHEDDEG--------DNNFQG
        MA +   PKH+WT++++  LVECL EL H +AKGL NKPFP+Y+ELA+VFG DR            GS   V  ++ D    ++E         D + + 
Subjt:  MAGADKHPKHIWTRQDEAKLVECLDELPHSSAKGLLNKPFPHYEELAFVFGKDRAR----------GSGCTVPAEQADNTHEDDEG--------DNNFQG

Query:  APTSRPSTTGS----SQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNM
           SRPS T      S   KR R S +   ++++  ++     Q   IA+WP    A +   R  +  +L V PEL+  +RV   R L   S+M +M
Subjt:  APTSRPSTTGS----SQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNM

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]3.2e-1430.14Show/hide
Query:  DEAKLVECLDEL------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAEQ--------ADNTH----------------EDDEGDNNFQGAPT
        D+ K +E   E+       H +AKGL NKP PHY++L   FGKDRA G+    P +         A++ H                 +D  + +    PT
Subjt:  DEAKLVECLDEL------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAEQ--------ADNTH----------------EDDEGDNNFQGAPT

Query:  SRPSTTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRL
        S+P+   SS   KR R+ Y +E +D++R ++ MQ     K+A WPD ++ ++  RR  V + L   P L  ++ V L+ IL  + K +     VP   + 
Subjt:  SRPSTTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRL

Query:  RFLRGLLNE
         F   LL +
Subjt:  RFLRGLLNE

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]4.6e-1333.73Show/hide
Query:  HSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVP-AEQADNTHEDDEGDNNFQGAPTSRPST-TGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKI
        H +AKG+  KPFPHY++L+ VFGKDRA    C  P   Q ++    DE D       T R S  T SS+  KR R+S++ E +DI++ +V MQ T   ++
Subjt:  HSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVP-AEQADNTHEDDEGDNNFQGAPTSRPST-TGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKI

Query:  ADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL
        A W +  +  E + ++ V  +  +  +L ++++V+L+ ++  D + T+   +VP   R R+   LL
Subjt:  ADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.9e-1437.35Show/hide
Query:  HSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAE-QADNTHEDDEGDNNFQGAPTSRPSTTG-SSQSQKRSRASYEAEALDIMRKSVVMQETQFTKI
        H +AKG+ NK F HY++L+ VFGKDRA    C  P   QA++    DE D       T R S    SS+  KR R S++AE +DIMR +V MQ T   ++
Subjt:  HSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAE-QADNTHEDDEGDNNFQGAPTSRPSTTG-SSQSQKRSRASYEAEALDIMRKSVVMQETQFTKI

Query:  ADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL
        A W   +   EF RR  V   +     L +D++V+ + +L  D + T+   +VP   R R+   LL
Subjt:  ADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL

TrEMBL top hitse value%identityAlignment
A0A5A7U4I8 Retrotransposon protein2.8e-1634.52Show/hide
Query:  MAGADKHPKHIWTRQDEAKLVECLDELPHSSAKGLLNKPFPHYEELAFVFGKDRAR----------GSGCTVPAEQADNTHEDDEG--------DNNFQG
        MA +   PKH+WT++++  LVECL EL H +AKGL NKPFP+Y+ELA+VFG DR            GS   V  ++ D    ++E         D + + 
Subjt:  MAGADKHPKHIWTRQDEAKLVECLDELPHSSAKGLLNKPFPHYEELAFVFGKDRAR----------GSGCTVPAEQADNTHEDDEG--------DNNFQG

Query:  APTSRPSTTGS----SQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNM
           SRPS T      S   KR R S +   ++++  ++     Q   IA+WP    A +   R  +  +L V PEL+  +RV   R L   S+M +M
Subjt:  APTSRPSTTGS----SQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNM

A0A5A7V4P8 Retrotransposon protein1.9e-1229.88Show/hide
Query:  MAGADKHPKHIWTRQDEAKLVECLDEL---------------------------------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAEQA
        M+ +++ P+H+WT+++E  LVECL EL                                  H +AKGLLNKPFP+Y+EL +VFG+DRA G      A+  
Subjt:  MAGADKHPKHIWTRQDEAKLVECLDEL---------------------------------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAEQA

Query:  DNT-----HEDDEGDNNFQGAP--------------TSRPS-----TTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDT
         N       + D GD N    P               SRPS      TGSS S KR R S     ++ +  ++     Q  +IA+WP    A +   R  
Subjt:  DNT-----HEDDEGDNNFQGAP--------------TSRPS-----TTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDT

Query:  VGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLLNE
           +L   PEL   +R  L R L +          +P   R  F R LL +
Subjt:  VGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLLNE

A0A5D3BZU3 Retrotransposon protein6.5e-1327.41Show/hide
Query:  MAGADKHPKHIWTRQDEAKLVECLDEL-------------------------------------------PHSSAKGLLNKPFPHYEELAFVFGKDRARG
        MA + +  KH WT+++EAKLVECL EL                                            H +AKGLL+K FP+Y++L++VFG D A G
Subjt:  MAGADKHPKHIWTRQDEAKLVECLDEL-------------------------------------------PHSSAKGLLNKPFPHYEELAFVFGKDRARG

Query:  SGCTVPAEQADN-------------THEDDEGDNNFQGAPTSRPSTTG-----------SSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQ
        +     A+   N             +H  D      QG   S     G            S   KR R S   E ++++  +      Q   I DWP  +
Subjt:  SGCTVPAEQADN-------------THEDDEGDNNFQGAPTSRPSTTG-----------SSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQ

Query:  DAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL
         A E + R  V + L   P+L   +R  LM+ILF   +      S+P  L+L +   LL
Subjt:  DAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLL

A0A6J1DW73 uncharacterized protein LOC1110250181.6e-1430.14Show/hide
Query:  DEAKLVECLDEL------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAEQ--------ADNTH----------------EDDEGDNNFQGAPT
        D+ K +E   E+       H +AKGL NKP PHY++L   FGKDRA G+    P +         A++ H                 +D  + +    PT
Subjt:  DEAKLVECLDEL------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAEQ--------ADNTH----------------EDDEGDNNFQGAPT

Query:  SRPSTTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRL
        S+P+   SS   KR R+ Y +E +D++R ++ MQ     K+A WPD ++ ++  RR  V + L   P L  ++ V L+ IL  + K +     VP   + 
Subjt:  SRPSTTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRL

Query:  RFLRGLLNE
         F   LL +
Subjt:  RFLRGLLNE

A0A6P5U2X6 uncharacterized protein At2g29880-like3.2e-1231.47Show/hide
Query:  DEAKLVECLDEL------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAE----QADNTHEDDEGDN----NFQGAPTSRPSTTGSSQSQKRSR
        DE K+V C  ++       H+SAKGL NKPFPHY+ L  VFGKDRA G G   PAE      DN+  + EGD     NF    T  P    S++  KR+R
Subjt:  DEAKLVECLDEL------PHSSAKGLLNKPFPHYEELAFVFGKDRARGSGCTVPAE----QADNTHEDDEGDN----NFQGAPTSRPSTTGSSQSQKRSR

Query:  ----ASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLLNE
            +   A+    +R  V + +T    +     +++A   +R   V E+  +Q  LSD + +     + +D    +++F++P  L++++++ LL++
Subjt:  ----ASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLMRILFADSKMTNMMFSVPPTLRLRFLRGLLNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCGAGGCCGACCTCATCCTCCTAGGGTTTTTAAGAATCTGGAGGTGTTTCGGGACGAACCAGGCGAAACCGGGGCGGTCATAGACATCAGGGACCGAAGGGAGGT
GGCCAAGCCCGACCCGCGCCCGCGGGCCGAATGGTCGGCCTCGGCCTTGGGCCGAGGCCGACCATATGGACAAGGACGTGCCCGATCTCCACCTTCCAGTGTTTCGTTTC
ACGCATCGGTGATCTCATATAACGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTGCAGAA
GCAGAGTATGCATTTAGGCATTACGTTACGGGCACCCGTGGTGAACCAAACCTCATTGACCAACATGAAGCGTGTCGAAACCTTCCTGTAGTGGGATATGGTCGTGTAGG
AAACTGTTATAGTATTAGTCGGATGTTCGTAGGGTTACTGTTTGGAATAATTGTAAAGATAATGGCAGGTGCAGATAAACACCCGAAACACATTTGGACGAGGCAGGACG
AGGCGAAGTTGGTGGAATGCCTAGATGAGCTCCCACACTCCAGTGCCAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGAACTTGCTTTCGTGTTTGGCAAAGAT
CGGGCGAGAGGCAGCGGGTGCACTGTTCCAGCAGAACAGGCAGACAACACCCACGAGGACGACGAGGGCGATAACAATTTCCAGGGGGCACCTACAAGCCGACCGAGCAC
TACAGGGTCCTCACAGAGTCAGAAGCGGAGCAGAGCATCATATGAAGCAGAAGCCCTTGATATTATGAGGAAGTCAGTGGTTATGCAAGAGACACAGTTCACGAAGATCG
CTGACTGGCCGGACACCCAGGACGCACGGGAATTCAAGAGGCGGGACACGGTTGGGGAGATGCTCCTGGTGCAGCCGGAGCTATCGGACGACGAGAGAGTATCTCTTATG
CGCATCCTCTTCGCCGACTCCAAGATGACGAACATGATGTTCTCGGTGCCACCGACCCTCAGGCTCCGATTCCTCCGAGGACTACTCAATGAACGCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCGAGGCCGACCTCATCCTCCTAGGGTTTTTAAGAATCTGGAGGTGTTTCGGGACGAACCAGGCGAAACCGGGGCGGTCATAGACATCAGGGACCGAAGGGAGGT
GGCCAAGCCCGACCCGCGCCCGCGGGCCGAATGGTCGGCCTCGGCCTTGGGCCGAGGCCGACCATATGGACAAGGACGTGCCCGATCTCCACCTTCCAGTGTTTCGTTTC
ACGCATCGGTGATCTCATATAACGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTGCAGAA
GCAGAGTATGCATTTAGGCATTACGTTACGGGCACCCGTGGTGAACCAAACCTCATTGACCAACATGAAGCGTGTCGAAACCTTCCTGTAGTGGGATATGGTCGTGTAGG
AAACTGTTATAGTATTAGTCGGATGTTCGTAGGGTTACTGTTTGGAATAATTGTAAAGATAATGGCAGGTGCAGATAAACACCCGAAACACATTTGGACGAGGCAGGACG
AGGCGAAGTTGGTGGAATGCCTAGATGAGCTCCCACACTCCAGTGCCAAGGGACTGCTGAACAAGCCATTTCCTCACTACGAGGAACTTGCTTTCGTGTTTGGCAAAGAT
CGGGCGAGAGGCAGCGGGTGCACTGTTCCAGCAGAACAGGCAGACAACACCCACGAGGACGACGAGGGCGATAACAATTTCCAGGGGGCACCTACAAGCCGACCGAGCAC
TACAGGGTCCTCACAGAGTCAGAAGCGGAGCAGAGCATCATATGAAGCAGAAGCCCTTGATATTATGAGGAAGTCAGTGGTTATGCAAGAGACACAGTTCACGAAGATCG
CTGACTGGCCGGACACCCAGGACGCACGGGAATTCAAGAGGCGGGACACGGTTGGGGAGATGCTCCTGGTGCAGCCGGAGCTATCGGACGACGAGAGAGTATCTCTTATG
CGCATCCTCTTCGCCGACTCCAAGATGACGAACATGATGTTCTCGGTGCCACCGACCCTCAGGCTCCGATTCCTCCGAGGACTACTCAATGAACGCCGATGA
Protein sequenceShow/hide protein sequence
MGRGRPHPPRVFKNLEVFRDEPGETGAVIDIRDRREVAKPDPRPRAEWSASALGRGRPYGQGRARSPPSSVSFHASVISYNGIYTSWVECHKQVNQFKGALHKSYPTFAE
AEYAFRHYVTGTRGEPNLIDQHEACRNLPVVGYGRVGNCYSISRMFVGLLFGIIVKIMAGADKHPKHIWTRQDEAKLVECLDELPHSSAKGLLNKPFPHYEELAFVFGKD
RARGSGCTVPAEQADNTHEDDEGDNNFQGAPTSRPSTTGSSQSQKRSRASYEAEALDIMRKSVVMQETQFTKIADWPDTQDAREFKRRDTVGEMLLVQPELSDDERVSLM
RILFADSKMTNMMFSVPPTLRLRFLRGLLNERR