; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010613 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010613
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA topoisomerase
Genome locationscaffold5:9253940..9256106
RNA-Seq ExpressionSpg010613
SyntenySpg010613
Gene Ontology termsGO:0006265 - DNA topological change (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003917 - DNA topoisomerase type I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR010666 - Zinc finger, GRF-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651154.1 hypothetical protein Csa_002203 [Cucumis sativus]2.9e-8185.79Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSS+VQR N GQSVCIFCQQVGHSSNDCPSQ VGSRSA RRQSGESSVSCS+CG+PCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGN 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+  RSN+RSSGSA SN NPG+NTGRGRG GRGR          GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

XP_011652135.2 DNA topoisomerase 3-alpha isoform X1 [Cucumis sativus]2.9e-8185.79Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSS+VQR N GQSVCIFCQQVGHSSNDCPSQ VGSRSA RRQSGESSVSCS+CG+PCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGN 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+  RSN+RSSGSA SN NPG+NTGRGRG GRGR          GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

XP_031738554.1 DNA topoisomerase 3-alpha isoform X2 [Cucumis sativus]2.9e-8185.79Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSS+VQR N GQSVCIFCQQVGHSSNDCPSQ VGSRSA RRQSGESSVSCS+CG+PCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGN 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+  RSN+RSSGSA SN NPG+NTGRGRG GRGR          GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

XP_038904101.1 DNA topoisomerase 3-alpha isoform X1 [Benincasa hispida]2.4e-8089.6Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSSSVQR NT QSVCIFCQQVGHSSNDCPSQ VGSRSA RRQSGE SVSCSNCGTPCVLRTANT NNRGRKFYKCQSQECNFFVWEDNVDN N 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+A RSNIR+SGSAA NPNPGRNTGRGR  GRG  +IAATFVSATGEPISDRRCFVCGD SHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

XP_038904102.1 DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida]2.4e-8089.6Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSSSVQR NT QSVCIFCQQVGHSSNDCPSQ VGSRSA RRQSGE SVSCSNCGTPCVLRTANT NNRGRKFYKCQSQECNFFVWEDNVDN N 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+A RSNIR+SGSAA NPNPGRNTGRGR  GRG  +IAATFVSATGEPISDRRCFVCGD SHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

TrEMBL top hitse value%identityAlignment
A0A0A0LBG7 DNA topoisomerase1.4e-8185.79Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSS+VQR N GQSVCIFCQQVGHSSNDCPSQ VGSRSA RRQSGESSVSCS+CG+PCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGN 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+  RSN+RSSGSA SN NPG+NTGRGRG GRGR          GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR----------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

A0A1S3B7B9 DNA topoisomerase4.5e-8085.64Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSS+VQR N GQSVCIFCQQVGHSSNDCPSQ VGS SA  RQSGESSVSCS+CGTPCVLRTANT NNRGRKFYKCQSQECNFFVWEDNVDN N 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR--------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+A RSN+RSSGSA SNPNPG+NTGRGRG  RGR        GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGR--------GQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

A0A6J1DNA0 DNA topoisomerase4.5e-8087.86Show/hide
Query:  RGRG-TSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        RGRG TSSSS QRGNTGQ VCI CQQVGHSSNDCPSQ VGSRSA RRQSGESSVSCSNCGTPCVLRTANTANNRGRKFY CQSQ+CNFFVWEDN+D+GN 
Subjt:  RGRG-TSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+APRSNIR S S ASNPNPG+NTG GR  GRGRG IA TFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

A0A6J1F0T9 DNA topoisomerase9.9e-8086.86Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSSSVQRGNT QSVC+FCQQ+ HSSNDCPSQ VGSRSA RRQ+GESS SCSNCGTPCVLRTANT NNRGRKFYKCQSQECNFF WED+VD+ N 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNT--GRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+A RSNIRSSGSAASN NPGRNT  GRGRG G+G+GQIAATFVSA GEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNT--GRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

A0A6J1F1M3 DNA topoisomerase9.9e-8086.86Show/hide
Query:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA
        ARGRGTSSSSVQRGNT QSVC+FCQQ+ HSSNDCPSQ VGSRSA RRQ+GESS SCSNCGTPCVLRTANT NNRGRKFYKCQSQECNFF WED+VD+ N 
Subjt:  ARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNVDNGNA

Query:  GNNAPRSNIRSSGSAASNPNPGRNT--GRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA
        GN+A RSNIRSSGSAASN NPGRNT  GRGRG G+G+GQIAATFVSA GEPISDRRCFVCGDPSHFANVCPNRGA
Subjt:  GNNAPRSNIRSSGSAASNPNPGRNT--GRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA

SwissProt top hitse value%identityAlignment
C7J0A2 DNA topoisomerase 3-alpha2.4e-3046.7Show/hide
Query:  PARGRGTSSSSVQRGNTGQSV-CIFCQQVGHSSNDCP-SQFVGSRSAGRRQSGESS--VSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNV
        PAR +  ++S V++G++ Q +   F   V  ++   P     G RS   + SG +S  V C++C  PCVLRTANT  NRGRKFYKCQ+  C FF WED+V
Subjt:  PARGRGTSSSSVQRGNTGQSV-CIFCQQVGHSSNDCP-SQFVGSRSAGRRQSGESS--VSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNV

Query:  DN----GNAG-NNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRG
        +N    G  G     RS+ R S ++AS    G   GRGR  GRGR      FV+ATGEP+    CF+CGDP+HFANVCPN G
Subjt:  DN----GNAG-NNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRG

O70157 DNA topoisomerase 3-alpha7.7e-0532.39Show/hide
Query:  PSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTAN-NRGRKFYKCQSQECNFFVWEDNVDNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGR
        PS+ V         +GES+    NCG   VL T      N+GR FYKC + +CNFF+W D+  + + G   P S        AS P PG +     GC  
Subjt:  PSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTAN-NRGRKFYKCQSQECNFFVWEDNVDNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGR

Query:  GRGQIAATFVSATGEPISDRRCFVCGDPSHFANV---CPNRG
          G     F S   +      C +CG P+    V    PN+G
Subjt:  GRGQIAATFVSATGEPISDRRCFVCGDPSHFANV---CPNRG

Q13472 DNA topoisomerase 3-alpha5.9e-0532.8Show/hide
Query:  SGESSVSCSNCGTPCVLRTANTAN-NRGRKFYKCQSQECNFFVWEDNVDNGNAGNNAPRSNIRSSGSAASNP-----------NPGRNTGRGRGCGRGRG
        +GES+    NCG   VL T      NRGR+F+KC    CNFF+W D+ + G  G   P    R  G++   P           NPG  +G G  C   + 
Subjt:  SGESSVSCSNCGTPCVLRTANTAN-NRGRKFYKCQSQECNFFVWEDNVDNGNAGNNAPRSNIRSSGSAASNP-----------NPGRNTGRGRGCGRGRG

Query:  QIAATFVSATGEPISDRRCFVCGDP
         +  T V   G P   R+   C  P
Subjt:  QIAATFVSATGEPISDRRCFVCGDP

Q9LVP1 DNA topoisomerase 3-alpha1.2e-3752.27Show/hide
Query:  RGRGTS-SSSVQRGNTGQS-VCIFCQQVGHSSNDCPSQFVGSR----SAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNV
        R  GT+ S+++Q  NT QS VCI CQQ GH+S +CPS+   SR    +A   ++ ES+VSC+ CG+ CVLRTANT  NRGR+F+ C +Q C+FF WED++
Subjt:  RGRGTS-SSSVQRGNTGQS-VCIFCQQVGHSSNDCPSQFVGSR----SAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNV

Query:  DNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNR
        +N ++GN    SN   SG   S    GR  GRG     GR     +FVSATGEP+S  RCF CGDPSHFAN CPNR
Subjt:  DNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNR

Arabidopsis top hitse value%identityAlignment
AT5G13920.1 GRF zinc finger / Zinc knuckle protein1.0e-0739.47Show/hide
Query:  CIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKC-QSQECNFFVWEDNV
        C  C+Q GH  NDCP +               ++ C   G  C ++ ANT  N GRKFYKC  +Q C FF W D V
Subjt:  CIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKC-QSQECNFFVWEDNV

AT5G63920.1 topoisomerase 3alpha8.4e-3952.27Show/hide
Query:  RGRGTS-SSSVQRGNTGQS-VCIFCQQVGHSSNDCPSQFVGSR----SAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNV
        R  GT+ S+++Q  NT QS VCI CQQ GH+S +CPS+   SR    +A   ++ ES+VSC+ CG+ CVLRTANT  NRGR+F+ C +Q C+FF WED++
Subjt:  RGRGTS-SSSVQRGNTGQS-VCIFCQQVGHSSNDCPSQFVGSR----SAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQSQECNFFVWEDNV

Query:  DNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNR
        +N ++GN    SN   SG   S    GR  GRG     GR     +FVSATGEP+S  RCF CGDPSHFAN CPNR
Subjt:  DNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCAGCATCAAAGAAACACTCTTCTGTTTACTTTTCCTCCCATTTTACTTTTTGCTCATTCAAATTATGTTTTCCAGCTAGAGGTCGAGGGACTTCATCATCCAG
TGTGCAGCGAGGTAACACTGGGCAAAGTGTATGCATTTTCTGCCAACAAGTAGGCCATTCCTCTAATGATTGCCCTTCCCAGTTTGTAGGTTCTAGAAGTGCTGGTCGTC
GGCAAAGTGGTGAATCTTCAGTTTCGTGTAGTAACTGTGGCACACCGTGTGTCTTACGGACTGCAAATACTGCCAATAATAGGGGAAGAAAGTTCTACAAATGTCAATCT
CAGGAGTGCAATTTCTTCGTATGGGAAGACAACGTAGACAATGGCAATGCAGGAAATAATGCTCCACGGTCAAATATCAGGAGCTCAGGCTCAGCAGCATCTAATCCTAA
CCCTGGTCGAAACACTGGTCGTGGTCGTGGCTGTGGCCGTGGCCGTGGTCAGATTGCAGCAACATTCGTTTCAGCAACTGGTGAGCCAATATCTGATAGAAGATGTTTTG
TTTGTGGCGATCCATCACACTTCGCAAATGTTTGTCCAAACCGTGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCAGCATCAAAGAAACACTCTTCTGTTTACTTTTCCTCCCATTTTACTTTTTGCTCATTCAAATTATGTTTTCCAGCTAGAGGTCGAGGGACTTCATCATCCAG
TGTGCAGCGAGGTAACACTGGGCAAAGTGTATGCATTTTCTGCCAACAAGTAGGCCATTCCTCTAATGATTGCCCTTCCCAGTTTGTAGGTTCTAGAAGTGCTGGTCGTC
GGCAAAGTGGTGAATCTTCAGTTTCGTGTAGTAACTGTGGCACACCGTGTGTCTTACGGACTGCAAATACTGCCAATAATAGGGGAAGAAAGTTCTACAAATGTCAATCT
CAGGAGTGCAATTTCTTCGTATGGGAAGACAACGTAGACAATGGCAATGCAGGAAATAATGCTCCACGGTCAAATATCAGGAGCTCAGGCTCAGCAGCATCTAATCCTAA
CCCTGGTCGAAACACTGGTCGTGGTCGTGGCTGTGGCCGTGGCCGTGGTCAGATTGCAGCAACATTCGTTTCAGCAACTGGTGAGCCAATATCTGATAGAAGATGTTTTG
TTTGTGGCGATCCATCACACTTCGCAAATGTTTGTCCAAACCGTGGTGCTTGA
Protein sequenceShow/hide protein sequence
MISASKKHSSVYFSSHFTFCSFKLCFPARGRGTSSSSVQRGNTGQSVCIFCQQVGHSSNDCPSQFVGSRSAGRRQSGESSVSCSNCGTPCVLRTANTANNRGRKFYKCQS
QECNFFVWEDNVDNGNAGNNAPRSNIRSSGSAASNPNPGRNTGRGRGCGRGRGQIAATFVSATGEPISDRRCFVCGDPSHFANVCPNRGA