CuGenDBv2

Gene ID	Spg010622
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA topoisomerase
Genome location	scaffold5:9223489..9224236
RNA-Seq Expression	Spg010622
Synteny	Spg010622
Gene Ontology terms	GO:0006265 - DNA topological change (biological process) GO:0005634 - nucleus (cellular component) GO:0005694 - chromosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003917 - DNA topoisomerase type I activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013824 - DNA topoisomerase, type IA, central region, subdomain 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022934066.1 DNA topoisomerase 3-alpha isoform X1 [Cucurbita moschata]

1.2e-13

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GYKLWKPHLRA+MEHEMK+VSEG KRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

XP_022934067.1 DNA topoisomerase 3-alpha isoform X2 [Cucurbita moschata]

1.2e-13

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GYKLWKPHLRA+MEHEMK+VSEG KRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

XP_038904101.1 DNA topoisomerase 3-alpha isoform X1 [Benincasa hispida]

5.5e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY LWKPHLRA+MEHEMK+VSEGTKRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

XP_038904102.1 DNA topoisomerase 3-alpha isoform X2 [Benincasa hispida]

5.5e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY LWKPHLRA+MEHEMK+VSEGTKRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

XP_038904103.1 DNA topoisomerase 3-alpha isoform X3 [Benincasa hispida]

5.5e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY LWKPHLRA+MEHEMK+VSEGTKRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKA3 DNA topoisomerase

1.0e-13

86.36

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY LWKPHLRA+MEHEMK+VSEGTKRKDEVLA+ LQQMK CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

A0A6J1F0T9 DNA topoisomerase

5.9e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GYKLWKPHLRA+MEHEMK+VSEG KRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

A0A6J1F1M3 DNA topoisomerase

5.9e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GYKLWKPHLRA+MEHEMK+VSEG KRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

A0A6J1IXM8 DNA topoisomerase

5.9e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GYKLWKPHLRA+MEHEMK+VSEG KRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

A0A6J1J603 DNA topoisomerase

5.9e-14

88.64

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GYKLWKPHLRA+MEHEMK+VSEG KRKDEVLAT LQQMK+CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

SwissProt top hits

e value

%identity

Alignment

C7J0A2 DNA topoisomerase 3-alpha

5.9e-11

70.45

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY+LWKP+LR++ME +MKSVS GTK K EVL   LQQMK CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

Q9LVP1 DNA topoisomerase 3-alpha

4.5e-11

70.45

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY+LWKP+LRA+MEH+M  VS G K K EVL T LQQMK CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

Arabidopsis top hits

e value

%identity

Alignment

AT5G63920.1 topoisomerase 3alpha

3.2e-12

70.45

Show/hide

Query:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD
        GY+LWKP+LRA+MEH+M  VS G K K EVL T LQQMK CFLD
Subjt:  GYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGCTAACGGAAAGGGAAAGGGAAGGGAGAGAAGAGGAGAGATGAGAGAGCATTTGGAGGGGGGGGGGGGGGGTTATAAACTGTGGAAACCACATCTTAGAGCTGT
CATGGAGCATGAGATGAAATCAGTTAGCGAGGGCACTAAGAGAAAAGATGAAGTTTTGGCTACATCCTTGCAGCAGATGAAAACTTGCTTCTTAGATGGAAATTGTGGTT
GA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKANGKGKGRERRGEMREHLEGGGGGYKLWKPHLRAVMEHEMKSVSEGTKRKDEVLATSLQQMKTCFLDGNCG

Spg010622 (gene) of Sponge gourd (cylindrica) v1 genome