CuGenDBv2

Gene ID	Spg010701
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Genome location	scaffold10:8310924..8315640
RNA-Seq Expression	Spg010701
Synteny	Spg010701
Gene Ontology terms	NA
InterPro domains	IPR009027 - Ribosomal protein L9/RNase H1, N-terminal IPR011320 - Ribonuclease H1, N-terminal IPR037056 - Ribonuclease H1, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

9.5e-46

60.38

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL++ LLKK +P+   C   RW+WF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

4.3e-46

61.01

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Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL+E LLKK +P+   C   RW+WF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

9.5e-46

60.38

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Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL++ LLKK +P+   C   RW+WF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-46

61.64

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Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL+E LLKK +P+   C   RWKWF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-45

59.87

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Query:  LVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVA
        L+ +L+    +QRQ+   +   MNN+ R+ +  P  RH+IR+LA FR+IHESDL CR+ST+MDRR F+ILC LLR  +GL  TEIVDVEEMVAMFLH++A
Subjt:  LVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVA

Query:  HDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        HDVKNRVI+R+F RSGETVSRHFN  L  VLRLYE L+K+  P+T++C   RWK F+
Subjt:  HDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

4.6e-46

60.38

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Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL++ LLKK +P+   C   RW+WF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

A0A5A7TXW1 Retrotransposon protein

4.6e-46

60.38

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Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL++ LLKK +P+   C   RW+WF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

A0A5A7U476 Retrotransposon protein

9.3e-47

61.64

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL+E LLKK +P+   C   RWKWF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

A0A5A7UUT3 Retrotransposon protein

6.0e-46

59.87

Show/hide

Query:  LVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVA
        L+ +L+    +QRQ+   +   MNN+ R+ +  P  RH+IR+LA FR+IHESDL CR+ST+MDRR F+ILC LLR  +GL  TEIVDVEEMVAMFLH++A
Subjt:  LVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVA

Query:  HDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        HDVKNRVI+R+F RSGETVSRHFN  L  VLRLYE L+K+  P+T++C   RWK F+
Subjt:  HDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

A0A5D3BDX0 Retrotransposon protein

2.1e-46

61.01

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Query:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+ST+MDRRCF+ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK
        +AHDVKNRVI+R+F RSGET+SRHFN  L  V+RL+E LLKK +P+   C   RW+WF+
Subjt:  VAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKLKPITASCQGGRWKWFK

SwissProt top hits

e value

%identity

Alignment

Q04740 Ribonuclease H

5.5e-04

24.58

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Query:  FYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAE-----------YAFRYYITGTRGKPNLIDQHEACRNLPV--GGYDHAEVPFIMDSITPH
        FY V  GR  GIY +W EC  QV  + GA++K + ++ +A+           Y    +  G   KP+   +    RN P+       +     + S   +
Subjt:  FYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAE-----------YAFRYYITGTRGKPNLIDQHEACRNLPV--GGYDHAEVPFIMDSITPH

Query:  ELVSILSIMADSQRQLFN
           S+ S + + + ++FN
Subjt:  ELVSILSIMADSQRQLFN

Q07762 Ribonuclease H

4.5e-06

45.61

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Query:  FYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAEYAFRYYITGTRGKPNL
        FYVV VGR  GIY++W +C +QV  F GA++KS+ T +EA    R Y+T    +  L
Subjt:  FYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAEYAFRYYITGTRGKPNL

Q9KEI9 Ribonuclease H

6.7e-10

47.3

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Query:  METSKFYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAEYAFRYYITGTRGKPNLIDQHEACRNLPV
        M  SK+YVV+ GR PGIYTSW  C  QV  + GA  KSYP+  EAE AFR    G    P L  +     +L V
Subjt:  METSKFYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAEYAFRYYITGTRGKPNLIDQHEACRNLPV

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

8.1e-11

35.23

Show/hide

Query:  FRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRL
        +++++  +  C E+ +MD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R ++  F  SGET+SRHFN  L+ V+ +
Subjt:  FRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRL

Sequences

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CDS sequence

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ATGGAGACATCGAAATTCTATGTTGTGTTTGTTGGTCGCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAGCCAGTTTAAGGGAGCACTACACAA
GTCGTATCCAACATTTGCAGAAGCAGAGTATGCATTTAGGTATTACATTACGGGCACCCGTGGCAAACCAAACCTCATTGACCAACATGAAGCGTGTCGTAACCTTCCTG
TAGGGGGATATGACCATGCTGAAGTACCATTCATAATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAAC
CTGATTAACTTCTTCATGAACAACCACCATAGAATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATCCATGAAAGTGACCT
GTGCTGTCGAGAAAGCACCAAGATGGATAGGAGATGTTTTTCCATACTATGTAGTTTGCTGAGAACGACTTCTGGGTTGGTAGGCACGGAAATCGTAGACGTGGAAGAGA
TGGTCGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATAGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCGTTTCTCGGCACTTCAACGCGACTTTG
AGTGTCGTACTACGATTGTATGAAGTTCTACTTAAGAAACTGAAACCGATCACGGCTTCTTGCCAAGGTGGGAGGTGGAAATGGTTCAAGGTATGGATACTCTATGTTAG
TACACATCGTGAAGATCTTACAACCACTACAACAATTAAGGTCTTTCCCGACGCGCATATGCGTCGGGAAAGATCGGAATACGCGTCGGCAAAAGTTCTCCCGACGCGTA
TTCAGACGTCGGGAGAATTGTTGGAAAAAACGAGTCGGCAGAGCCTCTGCCGACGCGTATTTTTCATGCGTTGCGTTGGTAGAAGTCTTGCTTCTCTCGACGCTGAAGGA
TTGGAATTCCGTAATTCCTGCGAACACCACCACTATGGCTACACCAGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCCAGAGGAAGTCTTGAGGGGAA
TTCTCTGAGAGTAAGAGAATGA

mRNA sequence

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Protein sequence

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METSKFYVVFVGRNPGIYTSWVECHKQVSQFKGALHKSYPTFAEAEYAFRYYITGTRGKPNLIDQHEACRNLPVGGYDHAEVPFIMDSITPHELVSILSIMADSQRQLFN
LINFFMNNHHRIENQSPYIRHQIRQLACFRLIHESDLCCRESTKMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATL
SVVLRLYEVLLKKLKPITASCQGGRWKWFKVWILYVSTHREDLTTTTTIKVFPDAHMRRERSEYASAKVLPTRIQTSGELLEKTSRQSLCRRVFFMRCVGRSLASLDAEG
LEFRNSCEHHHYGYTSMTLRLLEAGDWWESRGSLEGNSLRVRE

Spg010701 (gene) of Sponge gourd (cylindrica) v1 genome