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Spg010708 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010708
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCACTA en-spm transposon protein
Genome locationscaffold10:6958755..6963050
RNA-Seq ExpressionSpg010708
SyntenySpg010708
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-0546.67Show/hide
Query:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST---------------VSLEENDVCWLHAISRTKLAGSSGGGVT
        MGVLG   YIVEL+NV CTG ALHN D S  +               + ++E+DV  LH + R+KL GS G GVT
Subjt:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST---------------VSLEENDVCWLHAISRTKLAGSSGGGVT

TYK02142.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]2.8e-0547.22Show/hide
Query:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST--------------------VSLEENDVCWLHAISRTKLA
        MGVL GP+YIVEL+NV CTG ALHNVD S  +                    V LEE+D   LHA+ + KLA
Subjt:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST--------------------VSLEENDVCWLHAISRTKLA

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.7e-0833.92Show/hide
Query:  LDKSEITVGESDDHLCRILQSSKLLVYTEVKSLQVNLMTTTIGESCDHSCPTTT------KTMGVLGGPHYIVELLNVCCTGRALHNVDRS---------
        LDK EI++    D++  IL    L +Y  V   QV    +T+    D+    +       K  GV GGPHYIV L+NV CTGR LH++DRS         
Subjt:  LDKSEITVGESDDHLCRILQSSKLLVYTEVKSLQVNLMTTTIGESCDHSCPTTT------KTMGVLGGPHYIVELLNVCCTGRALHNVDRS---------

Query:  -------------------------------------WSTVS---LEENDVCWLHAISRTKLAGSSGGGVT
                                             W   S   + ENDVCWLHA+ R K+AG SGGGVT
Subjt:  -------------------------------------WSTVS---LEENDVCWLHAISRTKLAGSSGGGVT

TYK21003.1 G-box-binding factor 1-like [Cucumis melo var. makuwa]5.3e-0478.12Show/hide
Query:  TKTMGVLGGPHYIVELLNVCCTGRALHNVDRS
        TKTMG+LG PHYIVEL+NV C G ALHNVD S
Subjt:  TKTMGVLGGPHYIVELLNVCCTGRALHNVDRS

TrEMBL top hitse value%identityAlignment
A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-0546.67Show/hide
Query:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST---------------VSLEENDVCWLHAISRTKLAGSSGGGVT
        MGVLG   YIVEL+NV CTG ALHN D S  +               + ++E+DV  LH + R+KL GS G GVT
Subjt:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST---------------VSLEENDVCWLHAISRTKLAGSSGGGVT

A0A5D3BTL2 CACTA en-spm transposon protein1.4e-0547.22Show/hide
Query:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST--------------------VSLEENDVCWLHAISRTKLA
        MGVL GP+YIVEL+NV CTG ALHNVD S  +                    V LEE+D   LHA+ + KLA
Subjt:  MGVLGGPHYIVELLNVCCTGRALHNVDRSWST--------------------VSLEENDVCWLHAISRTKLA

A0A5D3CAC6 Uncharacterized protein1.3e-0833.92Show/hide
Query:  LDKSEITVGESDDHLCRILQSSKLLVYTEVKSLQVNLMTTTIGESCDHSCPTTT------KTMGVLGGPHYIVELLNVCCTGRALHNVDRS---------
        LDK EI++    D++  IL    L +Y  V   QV    +T+    D+    +       K  GV GGPHYIV L+NV CTGR LH++DRS         
Subjt:  LDKSEITVGESDDHLCRILQSSKLLVYTEVKSLQVNLMTTTIGESCDHSCPTTT------KTMGVLGGPHYIVELLNVCCTGRALHNVDRS---------

Query:  -------------------------------------WSTVS---LEENDVCWLHAISRTKLAGSSGGGVT
                                             W   S   + ENDVCWLHA+ R K+AG SGGGVT
Subjt:  -------------------------------------WSTVS---LEENDVCWLHAISRTKLAGSSGGGVT

A0A5D3DBQ7 G-box-binding factor 1-like2.6e-0478.12Show/hide
Query:  TKTMGVLGGPHYIVELLNVCCTGRALHNVDRS
        TKTMG+LG PHYIVEL+NV C G ALHNVD S
Subjt:  TKTMGVLGGPHYIVELLNVCCTGRALHNVDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGCGGTTGAAGACTTCACTTTCGCCTCATCTTCAAAATTTCGTGGTCGACCGTCAACAACTTCTTTTCATATTCAAAGGATAGCAATGGAAGGATTTGTTGTCGC
TTCATCTTCAAAAGTTGGTAGTCGAAAACGTCACTTCATCTTCAAAGGTTGGCGGTGGAAGGACTTGTTTTCGCTTCAGCTTCAAAAGTTGGCAGTTGACGACCTTGCTT
CATTTTCAAAAGTTGGTATCAAACTGGTTGGTCTAGACAAGAGTGAAATCACTGTAGGCGAATCTGATGACCACCTCTGCAGGATACTACAGTCATCAAAGTTACTAGTC
TATACAGAAGTGAAGTCACTGCAAGTGAACTTGATGACAACCACTATAGGTGAATCTTGTGATCATTCCTGCCCCACTACGACAAAGACGATGGGTGTGCTGGGTGGGCC
CCACTACATCGTAGAGCTACTAAACGTTTGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGGTCAACAGTATCGTTAGAGGAGAACGATGTCTGTTGGCTTC
ACGCCATCTCTCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAAATCTGGTGTCCACTCCTACAGGATACTACAATCATCAAAGTGATTGGTCTGGACAGGAG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGCGGTTGAAGACTTCACTTTCGCCTCATCTTCAAAATTTCGTGGTCGACCGTCAACAACTTCTTTTCATATTCAAAGGATAGCAATGGAAGGATTTGTTGTCGC
TTCATCTTCAAAAGTTGGTAGTCGAAAACGTCACTTCATCTTCAAAGGTTGGCGGTGGAAGGACTTGTTTTCGCTTCAGCTTCAAAAGTTGGCAGTTGACGACCTTGCTT
CATTTTCAAAAGTTGGTATCAAACTGGTTGGTCTAGACAAGAGTGAAATCACTGTAGGCGAATCTGATGACCACCTCTGCAGGATACTACAGTCATCAAAGTTACTAGTC
TATACAGAAGTGAAGTCACTGCAAGTGAACTTGATGACAACCACTATAGGTGAATCTTGTGATCATTCCTGCCCCACTACGACAAAGACGATGGGTGTGCTGGGTGGGCC
CCACTACATCGTAGAGCTACTAAACGTTTGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGGTCAACAGTATCGTTAGAGGAGAACGATGTCTGTTGGCTTC
ACGCCATCTCTCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAAATCTGGTGTCCACTCCTACAGGATACTACAATCATCAAAGTGATTGGTCTGGACAGGAG
TGA
Protein sequenceShow/hide protein sequence
MLAVEDFTFASSSKFRGRPSTTSFHIQRIAMEGFVVASSSKVGSRKRHFIFKGWRWKDLFSLQLQKLAVDDLASFSKVGIKLVGLDKSEITVGESDDHLCRILQSSKLLV
YTEVKSLQVNLMTTTIGESCDHSCPTTTKTMGVLGGPHYIVELLNVCCTGRALHNVDRSWSTVSLEENDVCWLHAISRTKLAGSSGGGVTNLVSTPTGYYNHQSDWSGQE