; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010717 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010717
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold10:9117658..9124649
RNA-Seq ExpressionSpg010717
SyntenySpg010717
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.9e-0447.62Show/hide
Query:  ESASENATSLTNHVRLTWP-------------AYHFDDKTERVAGNIITQDGIHSFQPLGLFI
        + +    TS T H ++T               AYHF DKTE  A NIITQDGIHSF PLG+FI
Subjt:  ESASENATSLTNHVRLTWP-------------AYHFDDKTERVAGNIITQDGIHSFQPLGLFI
KAA0054558.1 hypothetical protein E6C27_scaffold24G003480 [Cucumis melo var. makuwa]6.9e-0476.47Show/hide
Query:  VRLTWPAYHFDDKTERVAGNIITQDGIHSFQPLG
        + LT  AYHF DKTE  AGNIITQDGIHSF PLG
Subjt:  VRLTWPAYHFDDKTERVAGNIITQDGIHSFQPLG
KAA0067076.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-0676.92Show/hide
Query:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
        AYHF DKTE   GNIITQDGIHSF PL LFIR AL+ KD
Subjt:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-0676.92Show/hide
Query:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
        AYHF DKTE   GNIITQDGIHSF PL LFIR AL+ KD
Subjt:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
TrEMBL top hitse value%identityAlignment
A0A5A7TKJ4 Gag/pol protein7.4e-0485.71Show/hide
Query:  AYHFDDKTERVAGNIITQDGIHSFQPLG
        AYHF+DKTE  AGNIITQDGIHSF PLG
Subjt:  AYHFDDKTERVAGNIITQDGIHSFQPLG
A0A5A7UHV6 Uncharacterized protein3.3e-0476.47Show/hide
Query:  VRLTWPAYHFDDKTERVAGNIITQDGIHSFQPLG
        + LT  AYHF DKTE  AGNIITQDGIHSF PLG
Subjt:  VRLTWPAYHFDDKTERVAGNIITQDGIHSFQPLG
A0A5A7VKV9 Gag/pol protein9.4e-0776.92Show/hide
Query:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
        AYHF DKTE   GNIITQDGIHSF PL LFIR AL+ KD
Subjt:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
A0A5D3C1P5 Gag-pol polyprotein3.3e-0447.62Show/hide
Query:  ESASENATSLTNHVRLTWP-------------AYHFDDKTERVAGNIITQDGIHSFQPLGLFI
        + +    TS T H ++T               AYHF DKTE  A NIITQDGIHSF PLG+FI
Subjt:  ESASENATSLTNHVRLTWP-------------AYHFDDKTERVAGNIITQDGIHSFQPLGLFI
A0A5D3DRR2 Gag/pol protein9.4e-0776.92Show/hide
Query:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
        AYHF DKTE   GNIITQDGIHSF PL LFIR AL+ KD
Subjt:  AYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATGTGAAAGTCTCTTGTATCTTCTTTGCCTTGCTCCTTGTGATTGGTCCTTCAGAGTGGAGTCAACCCTAATTAGGTCAAATATTACACGTGGAACACTCTCCAA
GCTTCCTAGATCCGAGAGTGCTTCTGAAAATGCCACCTCATTAACGAATCACGTGCGGCTCACGTGGCCAGCCTACCATTTTGACGACAAGACCGAGCGGGTGGCTGGGA
ACATAATCACACAAGATGGAATTCACTCCTTCCAACCTTTAGGGTTGTTTATTAGAGAAGCACTGGTACTTAAGGATAGAGAAAAATTCTACAGTGAGAAGAGTGCAGCT
GTGGGTCTATGGTCCATTAGGTCCCACTGCAGCGTCCGGCGAGGTGTTTCAAGCAGTGCGGCGGTCGAGCTCCCTATTTCTCCTTCATCTTCGGCGGCTTGTAGTGATCC
GGCAAGGTACCCAATGATTGAGGCATGTGATTGCAAGGTTCTCTTAGCTTTCGGGGATTTAATCGTCAATTTGGAGCAGTGGGCACGGGATCGTGCGCTCTATCAGTCTC
AGGACGGTGTTGAGCCCAGGCACGAGATCGTGCGCCCGATGGCACTCAGGCATGTTTTCATGCATCAGATTGCTGATAAGGAAAACAGAGGAAAAGCTGGAATTCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATGTGAAAGTCTCTTGTATCTTCTTTGCCTTGCTCCTTGTGATTGGTCCTTCAGAGTGGAGTCAACCCTAATTAGGTCAAATATTACACGTGGAACACTCTCCAA
GCTTCCTAGATCCGAGAGTGCTTCTGAAAATGCCACCTCATTAACGAATCACGTGCGGCTCACGTGGCCAGCCTACCATTTTGACGACAAGACCGAGCGGGTGGCTGGGA
ACATAATCACACAAGATGGAATTCACTCCTTCCAACCTTTAGGGTTGTTTATTAGAGAAGCACTGGTACTTAAGGATAGAGAAAAATTCTACAGTGAGAAGAGTGCAGCT
GTGGGTCTATGGTCCATTAGGTCCCACTGCAGCGTCCGGCGAGGTGTTTCAAGCAGTGCGGCGGTCGAGCTCCCTATTTCTCCTTCATCTTCGGCGGCTTGTAGTGATCC
GGCAAGGTACCCAATGATTGAGGCATGTGATTGCAAGGTTCTCTTAGCTTTCGGGGATTTAATCGTCAATTTGGAGCAGTGGGCACGGGATCGTGCGCTCTATCAGTCTC
AGGACGGTGTTGAGCCCAGGCACGAGATCGTGCGCCCGATGGCACTCAGGCATGTTTTCATGCATCAGATTGCTGATAAGGAAAACAGAGGAAAAGCTGGAATTCCCTAA
Protein sequenceShow/hide protein sequence
MQCESLLYLLCLAPCDWSFRVESTLIRSNITRGTLSKLPRSESASENATSLTNHVRLTWPAYHFDDKTERVAGNIITQDGIHSFQPLGLFIREALVLKDREKFYSEKSAA
VGLWSIRSHCSVRRGVSSSAAVELPISPSSSAACSDPARYPMIEACDCKVLLAFGDLIVNLEQWARDRALYQSQDGVEPRHEIVRPMALRHVFMHQIADKENRGKAGIP