; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010728 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010728
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold10:7810420..7812999
RNA-Seq ExpressionSpg010728
SyntenySpg010728
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]3.2e-2444.24Show/hide
Query:  TRTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSS
        TR+L P   VT R+  WW  KHG Y   N H LV SVIP PS+P+LPKN G N GGK++RL E     L +   EH + S SS  D HWKRP KKAKVS 
Subjt:  TRTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSS

Query:  TNVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
         + D               SPL D LEG+ E  S+ESLT P+  D+  + +  S+   N+    S
Subjt:  TNVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

KAA0042070.1 hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa]5.8e-2648.98Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST
        R+L P   VT R+  WW  +HG Y   N+H LV SVIP PS+PKLPKN G N GGK++RL E   + L +  +EH + + SS  D HWKRP KKAKVSS 
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST

Query:  NVD---NSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSK
        + D   +S   SPL   LEG+ E  ++ESLT P+V D+T + +  SK
Subjt:  NVD---NSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSK

KAA0048379.1 hypothetical protein E6C27_scaffold264G00980 [Cucumis melo var. makuwa]7.1e-2444.51Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST
        R L P+  VT R+  WW  KHG Y   N H LV S IP PS+P+LPKN G N GGK++RL E  T  L +   EH + S SS  D HWKR  KKAKVSS 
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST

Query:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
        + D               SPL D LEG+ E  S+ESLT P+  D+  + +  SK   N+    S
Subjt:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]4.2e-2444.51Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKV---
        R+L P   VT ++  WW  KHG Y   N H LV SVIPSPS+P+LPKN G N GGK++RL E     L +   EH + S +S  D HWKRP KKAKV   
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKV---

Query:  -------SSTNVDNSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
               S+  V +    SPL D LEG+ E  S++SLT P+  D+  + +  SK L N+ A  S
Subjt:  -------SSTNVDNSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

TYK16513.1 hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa]7.1e-2444.51Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST
        R+L P   VT ++  WW  +HG Y   N H L+ S IP PS+PKLPKN G N GGKK+RL E  T  L +   EH + S SS  D HWKRP KKAKVS  
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST

Query:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
        N D               SPL + LEG+ E  S+E LT P+V D+  + +  SK   N+ A  S
Subjt:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

TrEMBL top hitse value%identityAlignment
A0A5A7SQC9 PMD domain-containing protein1.5e-2444.24Show/hide
Query:  TRTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSS
        TR+L P   VT R+  WW  KHG Y   N H LV SVIP PS+P+LPKN G N GGK++RL E     L +   EH + S SS  D HWKRP KKAKVS 
Subjt:  TRTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSS

Query:  TNVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
         + D               SPL D LEG+ E  S+ESLT P+  D+  + +  S+   N+    S
Subjt:  TNVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

A0A5A7U4K9 Uncharacterized protein3.4e-2444.51Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST
        R L P+  VT R+  WW  KHG Y   N H LV S IP PS+P+LPKN G N GGK++RL E  T  L +   EH + S SS  D HWKR  KKAKVSS 
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST

Query:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
        + D               SPL D LEG+ E  S+ESLT P+  D+  + +  SK   N+    S
Subjt:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

A0A5A7U8L3 PMD domain-containing protein2.0e-2444.51Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKV---
        R+L P   VT ++  WW  KHG Y   N H LV SVIPSPS+P+LPKN G N GGK++RL E     L +   EH + S +S  D HWKRP KKAKV   
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKV---

Query:  -------SSTNVDNSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
               S+  V +    SPL D LEG+ E  S++SLT P+  D+  + +  SK L N+ A  S
Subjt:  -------SSTNVDNSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

A0A5D3CXA5 Uncharacterized protein3.4e-2444.51Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST
        R+L P   VT ++  WW  +HG Y   N H L+ S IP PS+PKLPKN G N GGKK+RL E  T  L +   EH + S SS  D HWKRP KKAKVS  
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST

Query:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS
        N D               SPL + LEG+ E  S+E LT P+V D+  + +  SK   N+ A  S
Subjt:  NVDNSF----------DESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSS

A0A5D3D2A0 PMD domain-containing protein2.8e-2648.98Show/hide
Query:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST
        R+L P   VT R+  WW  +HG Y   N+H LV SVIP PS+PKLPKN G N GGK++RL E   + L +  +EH + + SS  D HWKRP KKAKVSS 
Subjt:  RTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKRPPKKAKVSST

Query:  NVD---NSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSK
        + D   +S   SPL   LEG+ E  ++ESLT P+V D+T + +  SK
Subjt:  NVD---NSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAATGTTAGCATTAACTCTTGGATATCTTTCTGGTTTAGAGGAGTTCAAAACCCGTACCCTAAACCCTCATACTCAGGTTACTTCACGGTATAAAAGGTGGTG
GTTGGCAAAACATGGGGATTATCTTGCGGTGAACGTGCATAAGTTAGTGGGTAGTGTCATTCCTTCTCCATCTCGTCCTAAACTACCCAAAAATAATGGGGGTAATCACG
GAGGAAAGAAACTTCGCTTGCCTGAGGATGACACTTCTGCTCTTGTACAAAATGCTTCAGAACATGGTGAATCAAGCTGCAGCAGTTCTCACGATCATCATTGGAAGAGA
CCACCCAAGAAAGCAAAGGTGTCTTCCACGAATGTAGATAACTCTTTTGATGAGTCACCTCTGAAAGATCCCCTTGAAGGAGTGGAGGAGCAATGCAGCGAGGAGTCACT
AACAAGTCCAAATGTTTTTGACAATACTGCGAAGCGTATGAGTGACTCTAAGGCGTTGTCCAACGAGAAAGCCATGAGCTCTAATCCTGCTCCTAAGACTTCTGAAAATC
ATCAGCAGCCCTATGATGCGCAAATTGCTTACCGCAAGTGTACGGGTCAAACTCCCCCAATCCGTAGCATGAAAAGAACATTAAATACCAATTCTGTCGATAGCGTCGAG
ACGCTAAGGAGACAGCGTCTCGACGCTGTCGCCTGCCGCACATTCTGTATAAGGGAAATTCGAGAGCGTCGAGACGCTCTTGTCACAGCGTCTCGACGCTGTGACTTCTG
CCGCCTAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCAATGTTAGCATTAACTCTTGGATATCTTTCTGGTTTAGAGGAGTTCAAAACCCGTACCCTAAACCCTCATACTCAGGTTACTTCACGGTATAAAAGGTGGTG
GTTGGCAAAACATGGGGATTATCTTGCGGTGAACGTGCATAAGTTAGTGGGTAGTGTCATTCCTTCTCCATCTCGTCCTAAACTACCCAAAAATAATGGGGGTAATCACG
GAGGAAAGAAACTTCGCTTGCCTGAGGATGACACTTCTGCTCTTGTACAAAATGCTTCAGAACATGGTGAATCAAGCTGCAGCAGTTCTCACGATCATCATTGGAAGAGA
CCACCCAAGAAAGCAAAGGTGTCTTCCACGAATGTAGATAACTCTTTTGATGAGTCACCTCTGAAAGATCCCCTTGAAGGAGTGGAGGAGCAATGCAGCGAGGAGTCACT
AACAAGTCCAAATGTTTTTGACAATACTGCGAAGCGTATGAGTGACTCTAAGGCGTTGTCCAACGAGAAAGCCATGAGCTCTAATCCTGCTCCTAAGACTTCTGAAAATC
ATCAGCAGCCCTATGATGCGCAAATTGCTTACCGCAAGTGTACGGGTCAAACTCCCCCAATCCGTAGCATGAAAAGAACATTAAATACCAATTCTGTCGATAGCGTCGAG
ACGCTAAGGAGACAGCGTCTCGACGCTGTCGCCTGCCGCACATTCTGTATAAGGGAAATTCGAGAGCGTCGAGACGCTCTTGTCACAGCGTCTCGACGCTGTGACTTCTG
CCGCCTAATTTAG
Protein sequenceShow/hide protein sequence
MSPMLALTLGYLSGLEEFKTRTLNPHTQVTSRYKRWWLAKHGDYLAVNVHKLVGSVIPSPSRPKLPKNNGGNHGGKKLRLPEDDTSALVQNASEHGESSCSSSHDHHWKR
PPKKAKVSSTNVDNSFDESPLKDPLEGVEEQCSEESLTSPNVFDNTAKRMSDSKALSNEKAMSSNPAPKTSENHQQPYDAQIAYRKCTGQTPPIRSMKRTLNTNSVDSVE
TLRRQRLDAVACRTFCIREIRERRDALVTASRRCDFCRLI