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Spg010753 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010753
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold10:7675408..7676465
RNA-Seq ExpressionSpg010753
SyntenySpg010753
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.2e-1831.21Show/hide
Query:  LSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTF
        L+++E+  +      + E  A+  NCL+GK++S+R +N++  R  M  VW L  G+ +  +G+++F+   +S L ++R+ +++PW F+  L++LK    +
Subjt:  LSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTF

Query:  DRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC-----WGQ
        D  ED+  D   FW Q H LPLG  N  + + +    G V    E+D C     WG+
Subjt:  DRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC-----WGQ

OMP10859.1 hypothetical protein COLO4_04212 [Corchorus olitorius]2.6e-1832.05Show/hide
Query:  DKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLIL
        D     +L+++E S +      +     + + CL+GK++S+R +NI+  R  +  VW L  G+ I  VGD +F+   +  + +DR+ ++SPW F+  L++
Subjt:  DKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLIL

Query:  LKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC
        L     F   E +  +E  FWVQ H LPLGL N  + + + S +G+V    E+D C
Subjt:  LKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC

TXG62009.1 hypothetical protein EZV62_013372 [Acer yangbiense]4.4e-1836.64Show/hide
Query:  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPL
        + +CLVGKV++ + IN +AF+  +  +W L   + I+ VG++IFL    +   RDRI +  PW FD +LI L+ P    +   + F+  +FWVQ H +PL
Subjt:  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPL

Query:  GLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ
           N R+A+ L  +IG ++   +E  +CWG+
Subjt:  GLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ

XP_040990949.1 uncharacterized protein LOC121238174 [Juglans microcarpa x Juglans regia]8.9e-1932.32Show/hide
Query:  DVIDKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGN
        D+ +  +  +L+++E   I  ++  +  N  + + CLVG+V++ + IN +AF+ TM  VW  C G  I  VGD++++   Q+    +RI    PW FD N
Subjt:  DVIDKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGN

Query:  LILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIG-IVHDTNEMD-ECWGQ
        L+ LK       P ++ F+    WVQ H+LPLG  N  +   + S IG ++    + D  CWG+
Subjt:  LILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIG-IVHDTNEMD-ECWGQ

XP_041016155.1 uncharacterized protein LOC121258677 [Juglans microcarpa x Juglans regia]1.5e-1834.72Show/hide
Query:  SALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKV
        S  +L+++E   I  ++  +  N  + + CLVGKV++ + IN DAF+ T+  VW  C G+ I  VGD++++   Q+    ++I    PW FD NL+ +K 
Subjt:  SALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKV

Query:  PTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIV
              P D+ F+    WVQ H+LPLG  N  +   + S IG V
Subjt:  PTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIV

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase5.6e-1931.21Show/hide
Query:  LSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTF
        L+++E+  +      + E  A+  NCL+GK++S+R +N++  R  M  VW L  G+ +  +G+++F+   +S L ++R+ +++PW F+  L++LK    +
Subjt:  LSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTF

Query:  DRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC-----WGQ
        D  ED+  D   FW Q H LPLG  N  + + +    G V    E+D C     WG+
Subjt:  DRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC-----WGQ

A0A1R3KUZ6 DUF4283 domain-containing protein1.2e-1832.05Show/hide
Query:  DKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLIL
        D     +L+++E S +      +     + + CL+GK++S+R +NI+  R  +  VW L  G+ I  VGD +F+   +  + +DR+ ++SPW F+  L++
Subjt:  DKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLIL

Query:  LKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC
        L     F   E +  +E  FWVQ H LPLGL N  + + + S +G+V    E+D C
Subjt:  LKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDEC

A0A5C7HUW5 CCHC-type domain-containing protein3.6e-1836.5Show/hide
Query:  TENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQ
        +E    + +CLVGKV++ + +N +AF+K +  +W     + I+ VGD+ F+    S+  R  I    PW FD NLI+L+ PT       ++F   +FWVQ
Subjt:  TENQAKLQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQ

Query:  FHHLPLGLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ
         H+LPL   N R+A+ L  +IG +V    +  ECWG+
Subjt:  FHHLPLGLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ

A0A5C7HZ89 DUF4283 domain-containing protein2.1e-1836.64Show/hide
Query:  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPL
        + +CLVGKV++ + IN +AF+  +  +W L   + I+ VG++IFL    +   RDRI +  PW FD +LI L+ P    +   + F+  +FWVQ H +PL
Subjt:  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPL

Query:  GLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ
           N R+A+ L  +IG ++   +E  +CWG+
Subjt:  GLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ

A0A5C7IHI0 CCHC-type domain-containing protein8.1e-1835.88Show/hide
Query:  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPL
        + +CLVGKV+S + +N +AF+  +  +W     + I+ VGD+ F+    +   RDRI +  PW FD +LI+L+ P        + F++ +FWVQ H +P+
Subjt:  LQNCLVGKVVSQRTINIDAFRKTMANVWYLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPL

Query:  GLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ
           N R+A+ L  +IG +V    E  ECWG+
Subjt:  GLRNNRVAQTLVSRIG-IVHDTNEMDECWGQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAAGAGGAGGGTCGTCGGCGCCGCTTGCAGCAGTCGTCCGGTGGTCAGATTCGGTCGTCGGGCTCTCCTCTGTTCAGAGGAGTTTCCCTCAGGCAAGTTTGTTTG
CCTGTTTTCCTCCTTCTTTGGAAGGTCATTGCTAGCCATGGATGTAATTGACAAGCTCTCAGCGCTCACACTCTCACAGAAGGAATCCAGCGGAATAAACACATCGGAGT
TAGGCTTAACAGAAAATCAGGCAAAGCTCCAAAATTGTCTCGTAGGAAAGGTTGTATCTCAACGAACTATCAACATTGATGCTTTTCGGAAAACTATGGCAAACGTATGG
TATTTATGTCGAGGGATTACCATTGATAATGTTGGGGACAGCATTTTTCTTATCAATCCACAGTCAATTTTGGGAAGAGATAGGATTGTGGAAGAGAGTCCGTGGTGTTT
TGATGGCAACTTGATTCTTCTCAAAGTCCCAACAACTTTCGATCGCCCCGAAGATATGACTTTTGATGAACCACAATTTTGGGTTCAATTCCACCACCTTCCTCTTGGAT
TACGAAACAACAGAGTGGCACAAACGCTCGTGAGCCGAATAGGGATTGTCCATGATACGAATGAAATGGATGAATGTTGGGGTCAGGACGGTTTGGAAACAGACAGTGGG
GAAAATTTTCGTGGCGATCTGAATCAATGGAAGAGGACAACGAACATGACCATGAAGAAAGACTTGGGTCCAGCCGATTCTCAAAAGTACAAATTGAAGTTTAGGGATTA
A
mRNA sequenceShow/hide mRNA sequence
ATGCGGAAGAGGAGGGTCGTCGGCGCCGCTTGCAGCAGTCGTCCGGTGGTCAGATTCGGTCGTCGGGCTCTCCTCTGTTCAGAGGAGTTTCCCTCAGGCAAGTTTGTTTG
CCTGTTTTCCTCCTTCTTTGGAAGGTCATTGCTAGCCATGGATGTAATTGACAAGCTCTCAGCGCTCACACTCTCACAGAAGGAATCCAGCGGAATAAACACATCGGAGT
TAGGCTTAACAGAAAATCAGGCAAAGCTCCAAAATTGTCTCGTAGGAAAGGTTGTATCTCAACGAACTATCAACATTGATGCTTTTCGGAAAACTATGGCAAACGTATGG
TATTTATGTCGAGGGATTACCATTGATAATGTTGGGGACAGCATTTTTCTTATCAATCCACAGTCAATTTTGGGAAGAGATAGGATTGTGGAAGAGAGTCCGTGGTGTTT
TGATGGCAACTTGATTCTTCTCAAAGTCCCAACAACTTTCGATCGCCCCGAAGATATGACTTTTGATGAACCACAATTTTGGGTTCAATTCCACCACCTTCCTCTTGGAT
TACGAAACAACAGAGTGGCACAAACGCTCGTGAGCCGAATAGGGATTGTCCATGATACGAATGAAATGGATGAATGTTGGGGTCAGGACGGTTTGGAAACAGACAGTGGG
GAAAATTTTCGTGGCGATCTGAATCAATGGAAGAGGACAACGAACATGACCATGAAGAAAGACTTGGGTCCAGCCGATTCTCAAAAGTACAAATTGAAGTTTAGGGATTA
A
Protein sequenceShow/hide protein sequence
MRKRRVVGAACSSRPVVRFGRRALLCSEEFPSGKFVCLFSSFFGRSLLAMDVIDKLSALTLSQKESSGINTSELGLTENQAKLQNCLVGKVVSQRTINIDAFRKTMANVW
YLCRGITIDNVGDSIFLINPQSILGRDRIVEESPWCFDGNLILLKVPTTFDRPEDMTFDEPQFWVQFHHLPLGLRNNRVAQTLVSRIGIVHDTNEMDECWGQDGLETDSG
ENFRGDLNQWKRTTNMTMKKDLGPADSQKYKLKFRD