; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010779 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010779
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionchloroplast RNA-binding protein 29
Genome locationscaffold10:6779148..6784168
RNA-Seq ExpressionSpg010779
SyntenySpg010779
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]7.5e-1731.38Show/hide
Query:  KSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLN-EKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKM
        K+ KA   +T   +   + N Q R         LN EKGF    S   G LP FI +VI+Q+ W++FCAHP++ +VPLVREFYA+L +   +   VRG  
Subjt:  KSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLN-EKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKM

Query:  VSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTK
        VS+S   IN V+ +  P+    ++ I N +   +   L+ VA  G +W                                                S   
Subjt:  VSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTK

Query:  GLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK
        G  IN+G +I  EI AC  ++ G LFF SLIT+LC+  +
Subjt:  GLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]1.3e-1626.69Show/hide
Query:  MRKRDFLNEKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRN
        ++ R    EKGF    S   G LP FI +VI+Q+ W++FCAHP++ +VPLVREFYA+L +   +   VRG  VS+S   IN V+ +  P+    ++ I+N
Subjt:  MRKRDFLNEKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRN

Query:  PSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTKGLEINIGSIIREEILACGKKRAGKLFFG
         + + +   L+ VA  G +W                                                S   G  IN+G +I  EI AC  ++ G LFF 
Subjt:  PSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTKGLEINIGSIIREEILACGKKRAGKLFFG

Query:  SLITQLCQRVK------------------------IVPGPSLSSEALTIA--------------YQQLDQLKDNL---------------------RTYW
        SLIT+LC+  +                           GP+ S++  + +               QQL  L+  L                     + +W
Subjt:  SLITQLCQRVK------------------------IVPGPSLSSEALTIA--------------YQQLDQLKDNL---------------------RTYW

Query:  AYAKEKDKAIREFYLSITPSIAPVFLDFPQSLLPREDKDSDDEEEENDDEEDEEKE
        AY+KE+D A+++   +      P F  FPQ +L  +D D + E E + D  +E  E
Subjt:  AYAKEKDKAIREFYLSITPSIAPVFLDFPQSLLPREDKDSDDEEEENDDEEDEEKE

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]3.6e-1134.46Show/hide
Query:  KAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSS
        + AS    F     +  ++E ++    R    EKGF   +++    P FI  VI+Q+ WQ FCAHP++ +VPLVREFYA++         VRG  V  SS
Subjt:  KAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSS

Query:  VGINRVYKIKAPL--HPRGNDAIRNPSAKQMRDALKLVANKGVQWKGS
          IN +Y +  P+  H    +AI  P   ++   L+ VA  G +W  S
Subjt:  VGINRVYKIKAPL--HPRGNDAIRNPSAKQMRDALKLVANKGVQWKGS

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]5.1e-1326.29Show/hide
Query:  ASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVG
        AS    F     ++ ++E ++    R    EK F   +++    P FI  VI Q+ WQ FCAHP++ +VPLVREFY ++         +RG  V  S   
Subjt:  ASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVG

Query:  INRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW----KGSQT------------------------------------------KGLEINIG
        IN ++ +  P+    ++ + + +  ++   L+ VA  G +W    +G+ T                                           G  IN+G
Subjt:  INRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW----KGSQT------------------------------------------KGLEINIG

Query:  SIIREEILACGKKRAGKLFFGSLITQLCQRVK
         +I  EI AC  +++G LFF SLIT +C+  +
Subjt:  SIIREEILACGKKRAGKLFFGSLITQLCQRVK

TYH88163.1 hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum]6.8e-1028.82Show/hide
Query:  ASLKTPFPKVFRDVNFQERME-IMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSV
        +S  TP   +  D   +ER + I + +  + EKGF   SN     P  I + I+ +KW+ FC         LVREFYASL  +  +  +VR K V  +S 
Subjt:  ASLKTPFPKVFRDVNFQERME-IMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSV

Query:  GINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW---------------------------------KGSQTKGLE-------------INI
         IN ++ +           I N +   ++  L +V N G QW                                   S T  +E             IN+
Subjt:  GINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW---------------------------------KGSQTKGLE-------------INI

Query:  GSIIREEILACGKKRAGKLFFGSLITQLC
        G II +EI  C KK+AG ++F SLIT LC
Subjt:  GSIIREEILACGKKRAGKLFFGSLITQLC

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)3.7e-1731.38Show/hide
Query:  KSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLN-EKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKM
        K+ KA   +T   +   + N Q R         LN EKGF    S   G LP FI +VI+Q+ W++FCAHP++ +VPLVREFYA+L +   +   VRG  
Subjt:  KSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLN-EKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKM

Query:  VSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTK
        VS+S   IN V+ +  P+    ++ I N +   +   L+ VA  G +W                                                S   
Subjt:  VSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTK

Query:  GLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK
        G  IN+G +I  EI AC  ++ G LFF SLIT+LC+  +
Subjt:  GLEINIGSIIREEILACGKKRAGKLFFGSLITQLCQRVK

A0A2P5BCG4 Uncharacterized protein (Fragment)6.2e-1726.69Show/hide
Query:  MRKRDFLNEKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRN
        ++ R    EKGF    S   G LP FI +VI+Q+ W++FCAHP++ +VPLVREFYA+L +   +   VRG  VS+S   IN V+ +  P+    ++ I+N
Subjt:  MRKRDFLNEKGF----SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRN

Query:  PSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTKGLEINIGSIIREEILACGKKRAGKLFFG
         + + +   L+ VA  G +W                                                S   G  IN+G +I  EI AC  ++ G LFF 
Subjt:  PSAKQMRDALKLVANKGVQWK----------------------------------------------GSQTKGLEINIGSIIREEILACGKKRAGKLFFG

Query:  SLITQLCQRVK------------------------IVPGPSLSSEALTIA--------------YQQLDQLKDNL---------------------RTYW
        SLIT+LC+  +                           GP+ S++  + +               QQL  L+  L                     + +W
Subjt:  SLITQLCQRVK------------------------IVPGPSLSSEALTIA--------------YQQLDQLKDNL---------------------RTYW

Query:  AYAKEKDKAIREFYLSITPSIAPVFLDFPQSLLPREDKDSDDEEEENDDEEDEEKE
        AY+KE+D A+++   +      P F  FPQ +L  +D D + E E + D  +E  E
Subjt:  AYAKEKDKAIREFYLSITPSIAPVFLDFPQSLLPREDKDSDDEEEENDDEEDEEKE

A0A2P5CXV1 Uncharacterized protein1.8e-1134.46Show/hide
Query:  KAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSS
        + AS    F     +  ++E ++    R    EKGF   +++    P FI  VI+Q+ WQ FCAHP++ +VPLVREFYA++         VRG  V  SS
Subjt:  KAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSS

Query:  VGINRVYKIKAPL--HPRGNDAIRNPSAKQMRDALKLVANKGVQWKGS
          IN +Y +  P+  H    +AI  P   ++   L+ VA  G +W  S
Subjt:  VGINRVYKIKAPL--HPRGNDAIRNPSAKQMRDALKLVANKGVQWKGS

A0A2P5DAQ2 Uncharacterized protein2.5e-1326.29Show/hide
Query:  ASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVG
        AS    F     ++ ++E ++    R    EK F   +++    P FI  VI Q+ WQ FCAHP++ +VPLVREFY ++         +RG  V  S   
Subjt:  ASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVG

Query:  INRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW----KGSQT------------------------------------------KGLEINIG
        IN ++ +  P+    ++ + + +  ++   L+ VA  G +W    +G+ T                                           G  IN+G
Subjt:  INRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW----KGSQT------------------------------------------KGLEINIG

Query:  SIIREEILACGKKRAGKLFFGSLITQLCQRVK
         +I  EI AC  +++G LFF SLIT +C+  +
Subjt:  SIIREEILACGKKRAGKLFFGSLITQLCQRVK

A0A5D2MA47 Uncharacterized protein3.3e-1028.82Show/hide
Query:  ASLKTPFPKVFRDVNFQERME-IMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSV
        +S  TP   +  D   +ER + I + +  + EKGF   SN     P  I + I+ +KW+ FC         LVREFYASL  +  +  +VR K V  +S 
Subjt:  ASLKTPFPKVFRDVNFQERME-IMRKRDFLNEKGF---SNRAGALPEFITRVISQYKWQEFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSV

Query:  GINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW---------------------------------KGSQTKGLE-------------INI
         IN ++ +           I N +   ++  L +V N G QW                                   S T  +E             IN+
Subjt:  GINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQW---------------------------------KGSQTKGLE-------------INI

Query:  GSIIREEILACGKKRAGKLFFGSLITQLC
        G II +EI  C KK+AG ++F SLIT LC
Subjt:  GSIIREEILACGKKRAGKLFFGSLITQLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G53460.1 chloroplast RNA-binding protein 294.6e-0468.97Show/hide
Query:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS
        +PSRF+RNV VSSDFE EE+ + A GDDS
Subjt:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS

AT3G53460.2 chloroplast RNA-binding protein 294.6e-0468.97Show/hide
Query:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS
        +PSRF+RNV VSSDFE EE+ + A GDDS
Subjt:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS

AT3G53460.3 chloroplast RNA-binding protein 294.6e-0468.97Show/hide
Query:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS
        +PSRF+RNV VSSDFE EE+ + A GDDS
Subjt:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS

AT3G53460.4 chloroplast RNA-binding protein 294.6e-0468.97Show/hide
Query:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS
        +PSRF+RNV VSSDFE EE+ + A GDDS
Subjt:  FPSRFIRNVVVSSDFEQEEETLDAYGDDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACAGAAAGATATCAAGGAGGCCGAGACCTCCAGTGACTCAGAAACAGAATCCGACTAAGAGATCAAGGAATTGGATGACGACCAAGTCCATTGACGACTCTCC
TGCAGCTCCTCCAACCGTCTCACCCGCCAAGCCGAAATTCAAATCTCCTAAGGCTGCATCTCTTAAAACTCCATTCCCCAAAGTCTTCAGAGATGTCAATTTTCAGGAAA
GGATGGAGATAATGAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCATAACCAGAGTTATCTCACAGTATAAATGGCAA
GAGTTTTGTGCTCACCCTCAGGAGGTCGTGGTGCCTTTAGTGCGAGAATTTTACGCCAGCCTAAGGGAGAAGAGCATAAGTATGGCAGTGGTGAGAGGCAAGATGGTCAG
CTTTTCTTCAGTGGGCATCAACAGGGTGTACAAGATTAAAGCACCCTTGCATCCAAGAGGAAATGATGCCATTCGGAACCCCTCGGCCAAACAAATGAGAGATGCACTGA
AATTGGTGGCCAACAAGGGTGTTCAGTGGAAAGGGTCCCAAACGAAGGGGTTGGAGATCAACATCGGGAGCATTATCAGGGAGGAGATTCTTGCCTGTGGAAAGAAAAGA
GCAGGAAAACTTTTCTTTGGGTCATTAATCACCCAGCTTTGTCAGAGGGTGAAGATAGTTCCTGGACCCTCACTGTCATCTGAAGCCCTAACAATTGCCTATCAACAGCT
GGATCAACTCAAGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAAAGATAAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCGAGTATTGCTCCCGTCTTTC
TCGATTTCCCTCAATCGCTGCTGCCTAGAGAAGATAAGGATTCTGATGATGAAGAAGAAGAGAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGAC
TACGGGATGGTTCGGCAAACGGCCTACTCCACTCCCCAAGCTCCTCTTGGGTATTCAATTGAAGAACACGACTCTTTCCACGGCTTAGAGTCCAACCGGGTTTCTCCACG
CTTCCCCTCTCGCTTCATTAGAAATGTCGTCGTCTCGTCCGATTTCGAACAGGAGGAAGAAACCCTTGACGCCTATGGAGACGACTCGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACAGAAAGATATCAAGGAGGCCGAGACCTCCAGTGACTCAGAAACAGAATCCGACTAAGAGATCAAGGAATTGGATGACGACCAAGTCCATTGACGACTCTCC
TGCAGCTCCTCCAACCGTCTCACCCGCCAAGCCGAAATTCAAATCTCCTAAGGCTGCATCTCTTAAAACTCCATTCCCCAAAGTCTTCAGAGATGTCAATTTTCAGGAAA
GGATGGAGATAATGAGAAAAAGAGATTTCCTCAACGAGAAGGGATTCTCTAATAGAGCGGGAGCACTGCCAGAGTTCATAACCAGAGTTATCTCACAGTATAAATGGCAA
GAGTTTTGTGCTCACCCTCAGGAGGTCGTGGTGCCTTTAGTGCGAGAATTTTACGCCAGCCTAAGGGAGAAGAGCATAAGTATGGCAGTGGTGAGAGGCAAGATGGTCAG
CTTTTCTTCAGTGGGCATCAACAGGGTGTACAAGATTAAAGCACCCTTGCATCCAAGAGGAAATGATGCCATTCGGAACCCCTCGGCCAAACAAATGAGAGATGCACTGA
AATTGGTGGCCAACAAGGGTGTTCAGTGGAAAGGGTCCCAAACGAAGGGGTTGGAGATCAACATCGGGAGCATTATCAGGGAGGAGATTCTTGCCTGTGGAAAGAAAAGA
GCAGGAAAACTTTTCTTTGGGTCATTAATCACCCAGCTTTGTCAGAGGGTGAAGATAGTTCCTGGACCCTCACTGTCATCTGAAGCCCTAACAATTGCCTATCAACAGCT
GGATCAACTCAAGGATAACCTGAGGACTTATTGGGCATATGCCAAGGAGAAAGATAAAGCCATTAGAGAGTTCTACCTCTCTATCACCCCGAGTATTGCTCCCGTCTTTC
TCGATTTCCCTCAATCGCTGCTGCCTAGAGAAGATAAGGATTCTGATGATGAAGAAGAAGAGAATGATGATGAAGAAGATGAAGAGAAAGAGAGTTCCTCGGACGAGGAC
TACGGGATGGTTCGGCAAACGGCCTACTCCACTCCCCAAGCTCCTCTTGGGTATTCAATTGAAGAACACGACTCTTTCCACGGCTTAGAGTCCAACCGGGTTTCTCCACG
CTTCCCCTCTCGCTTCATTAGAAATGTCGTCGTCTCGTCCGATTTCGAACAGGAGGAAGAAACCCTTGACGCCTATGGAGACGACTCGAAGTAG
Protein sequenceShow/hide protein sequence
MKNRKISRRPRPPVTQKQNPTKRSRNWMTTKSIDDSPAAPPTVSPAKPKFKSPKAASLKTPFPKVFRDVNFQERMEIMRKRDFLNEKGFSNRAGALPEFITRVISQYKWQ
EFCAHPQEVVVPLVREFYASLREKSISMAVVRGKMVSFSSVGINRVYKIKAPLHPRGNDAIRNPSAKQMRDALKLVANKGVQWKGSQTKGLEINIGSIIREEILACGKKR
AGKLFFGSLITQLCQRVKIVPGPSLSSEALTIAYQQLDQLKDNLRTYWAYAKEKDKAIREFYLSITPSIAPVFLDFPQSLLPREDKDSDDEEEENDDEEDEEKESSSDED
YGMVRQTAYSTPQAPLGYSIEEHDSFHGLESNRVSPRFPSRFIRNVVVSSDFEQEEETLDAYGDDSK