; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010788 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010788
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold10:5997400..5999951
RNA-Seq ExpressionSpg010788
SyntenySpg010788
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-1760.42Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   K F+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-1861.46Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]9.9e-1861.46Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]2.2e-1762.64Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTE
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTE

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]4.4e-1862.5Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.1e-1760.42Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   K F+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

A0A5A7TQ06 Retrotransposon gag protein4.8e-1861.46Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

A0A5A7VHY3 Uncharacterized protein1.1e-1762.64Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTE
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTE

A0A5D3BBF9 Gag protease polyprotein4.8e-1861.46Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

A0A5D3E2D7 Gag protease polyprotein2.1e-1862.5Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE SL V
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTGAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCA
CGCTTCGCTGCTTCGCCGTTCCTTTTCCATGTTCGAAGGTTCTCACGCTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACACTAGGCTGCGCTGTTGCGCT
ACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGCTCGGAGGTTCTGACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGATTC
TCACGCAACGCTGTTTCGCTGTACCTTCTCCAAGTTCGAAGGTTCTCATGTTGCTTCACTATTGTTCCTTCTTCAATTTCGAAGGTTCATACGGCGCTGCCTCGTTGTTC
CTTCTCCAAGTTCAAAGGTTTTCACGTTGTGTTCCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGCTAGGTTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAA
GGTTCCCACATTGCGCTATTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCGCATGTTGTGCTGTTGCCCGCTGCTTCCTTCTCCCTCCAAGTTCGAAGTTCTCGTGCTA
CGCTGCTTTGCTTTTCCTTCTCCAAGTTCGAAGGTTCTGCTTTGTTGAAAGATGTGGCAGCGGAAAAAGACCAAGGAACATGTGCTTGCACTCATGCTGGAAGGCGTGAC
GGCGACAAAAGTCCAAGGAACATGTCCTTGAACTCATGCTGGAAGGCATGGTGGCGGCAAAAGTCCAAGGAACATGTTCTTGAACTCACGCCGAAAGGCGTGACGGCGGC
AAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGGAAGGCGTGGCGGCGACAAAAGTACAAGGAACATGTCCAAAGTCCAAGGAACATG
TCCTTGCACTCATGTTGGAAGGCGTGGCGACGACAAAAGTCCAAGGAGCATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGAAAGGCGTGGCGGCGACAAAA
GTCCAAGGAACATGTCCTTGCACTCATGTTGGAAGGCGTGGCGGCGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAATATGTCGTTGCACTCATGCCGAAAGGCG
TGGCGGCGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACACGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTACAAGGAACATGTCCTTGCACT
CATGCTGGAAGGCTAGGCGACGACAAAAGTCGAAGGAGCATGTCCCAAAGTTCAAGGAACATGTCCCTATACTCATGCTGAAAGACGTGGCAGCGGCAAAAGTCCAAGGA
ACATGTTCCTGTACTCATGCTGAAAGACGTGGCAACAGCAAAAGTTCGAGGAACATGTCCCTGTACTCATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTGAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCA
CGCTTCGCTGCTTCGCCGTTCCTTTTCCATGTTCGAAGGTTCTCACGCTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACACTAGGCTGCGCTGTTGCGCT
ACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGCTCGGAGGTTCTGACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGATTC
TCACGCAACGCTGTTTCGCTGTACCTTCTCCAAGTTCGAAGGTTCTCATGTTGCTTCACTATTGTTCCTTCTTCAATTTCGAAGGTTCATACGGCGCTGCCTCGTTGTTC
CTTCTCCAAGTTCAAAGGTTTTCACGTTGTGTTCCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGCTAGGTTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAA
GGTTCCCACATTGCGCTATTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCGCATGTTGTGCTGTTGCCCGCTGCTTCCTTCTCCCTCCAAGTTCGAAGTTCTCGTGCTA
CGCTGCTTTGCTTTTCCTTCTCCAAGTTCGAAGGTTCTGCTTTGTTGAAAGATGTGGCAGCGGAAAAAGACCAAGGAACATGTGCTTGCACTCATGCTGGAAGGCGTGAC
GGCGACAAAAGTCCAAGGAACATGTCCTTGAACTCATGCTGGAAGGCATGGTGGCGGCAAAAGTCCAAGGAACATGTTCTTGAACTCACGCCGAAAGGCGTGACGGCGGC
AAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGGAAGGCGTGGCGGCGACAAAAGTACAAGGAACATGTCCAAAGTCCAAGGAACATG
TCCTTGCACTCATGTTGGAAGGCGTGGCGACGACAAAAGTCCAAGGAGCATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGAAAGGCGTGGCGGCGACAAAA
GTCCAAGGAACATGTCCTTGCACTCATGTTGGAAGGCGTGGCGGCGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAATATGTCGTTGCACTCATGCCGAAAGGCG
TGGCGGCGGCAAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACACGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTACAAGGAACATGTCCTTGCACT
CATGCTGGAAGGCTAGGCGACGACAAAAGTCGAAGGAGCATGTCCCAAAGTTCAAGGAACATGTCCCTATACTCATGCTGAAAGACGTGGCAGCGGCAAAAGTCCAAGGA
ACATGTTCCTGTACTCATGCTGAAAGACGTGGCAACAGCAAAAGTTCGAGGAACATGTCCCTGTACTCATGCTGA
Protein sequenceShow/hide protein sequence
MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKVLTLRCFLHQVRRFS
RFAASPFLFHVRRFSRCVASFSKFEGSHATLGCAVALLPSLSSKVPTLRCCAASFSKLGGSDVALLPSPSSKILTQRCFAVPSPSSKVLMLLHYCSFFNFEGSYGAASLF
LLQVQRFSRCVPSFSKFEGFHATLGCAIALLPSLSSKVPTLRYCAASFSKFESSHVVLLPAASFSLQVRSSRATLLCFSFSKFEGSALLKDVAAEKDQGTCACTHAGRRD
GDKSPRNMSLNSCWKAWWRQKSKEHVLELTPKGVTAAKVQGTCPKSKEHVLALMLEGVAATKVQGTCPKSKEHVLALMLEGVATTKVQGACPKSKEHVLALMLKGVAATK
VQGTCPCTHVGRRGGGKSPRNMSKVQGICRCTHAERRGGGKSPRNMSKVQGTRPCTHAGRRGGDKSTRNMSLHSCWKARRRQKSKEHVPKFKEHVPILMLKDVAAAKVQG
TCSCTHAERRGNSKSSRNMSLYSC