; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010803 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010803
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:7185440..7188594
RNA-Seq ExpressionSpg010803
SyntenySpg010803
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]3.8e-3046.34Show/hide
Query:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT
        +  L+QFGT +PVVVRF +E   + SQEK   IE+++EGWT+V RRKK+K +  QKE R +R+ ++  K+Q+ K KKK+R+ K + EE +DF      +T
Subjt:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT

Query:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        LA++FP RFL D Q E   +V CH ++ +E++++P  S E      DLS F++ DLLSLPQE K
Subjt:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-2735.57Show/hide
Query:  TPLAVASRISKLIE---ESSKDRVAAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLD
        TPL  + R     E   + SK R   +K+    E   P        +   ++ ++    D +E   +    L ++++    R   I   +  L+QFGT +
Subjt:  TPLAVASRISKLIE---ESSKDRVAAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLD

Query:  PVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLD
        P+VV+F +E  ++ S  K  SIE++NEGW +V RR K+K +  QKES  +R+ +R  K+Q+ K KKK+R+ K V EE +DF  P   +T+A+ FP RFL 
Subjt:  PVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLD

Query:  DSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        D Q E  E++TCH ++  E++ +P+ S E      +LS F++ DLLSLPQE K
Subjt:  DSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

KAA0054153.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-2745.12Show/hide
Query:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT
        K  L+QF T +PVVV+F +E   + SQEK   IE+++EGWT+V RRKK+K +  QK+ R +++ +R  K+Q+ K KKK+R+ K V EE +DF      +T
Subjt:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT

Query:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        LA++FP RFL D Q E   +V CH ++  E++ +P  S E       LS F++ DLLSLPQE K
Subjt:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-2941.41Show/hide
Query:  MADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKR
        + +V Q    A M     +L +++ E+       +  L+QFGT +PVVV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  QKE R +R+ +R
Subjt:  MADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKR

Query:  NVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
          K+Q+ K KKK+++ K + EE +DF      +TLA +FP RFL D Q E  E+V CH +D +E++ +P  S E      DL  F++ DLLSLPQE K
Subjt:  NVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

KAA0057705.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.0e-2845.73Show/hide
Query:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT
        +  L+QFGT +PVVV F ++  ++ SQEK   IE+++EGW +V RRKK+K +  QKESR +R+ +R  K+Q+ K KKK+R+ K V EE +DF      + 
Subjt:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT

Query:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        LA++FP RFL D Q E   IV CH ++  ++  +P  S E      DLS F++ DLLSLPQE K
Subjt:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

TrEMBL top hitse value%identityAlignment
A0A5A7SWL2 Ty3-gypsy retrotransposon protein1.1e-2744.51Show/hide
Query:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT
        +  L+QFGT +P++V+F +E   K SQEK  SI++++EGW +V  RKK+K +  QKESR +R+ +R  K+Q+ K  KK+RR K V EE +DF  P   +T
Subjt:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT

Query:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        LA++F  RFL D Q E   +V CH ++ +E++ +P  S E      +LS  ++ DLLSLPQE K
Subjt:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

A0A5A7TY01 Ty3-gypsy retrotransposon protein8.7e-2835.57Show/hide
Query:  TPLAVASRISKLIE---ESSKDRVAAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLD
        TPL  + R     E   + SK R   +K+    E   P        +   ++ ++    D +E   +    L ++++    R   I   +  L+QFGT +
Subjt:  TPLAVASRISKLIE---ESSKDRVAAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLD

Query:  PVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLD
        P+VV+F +E  ++ S  K  SIE++NEGW +V RR K+K +  QKES  +R+ +R  K+Q+ K KKK+R+ K V EE +DF  P   +T+A+ FP RFL 
Subjt:  PVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLD

Query:  DSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        D Q E  E++TCH ++  E++ +P+ S E      +LS F++ DLLSLPQE K
Subjt:  DSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

A0A5A7UVV7 Retrotransposon gag protein3.9e-2845.73Show/hide
Query:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT
        +  L+QFGT +PVVV F ++  ++ SQEK   IE+++EGW +V RRKK+K +  QKESR +R+ +R  K+Q+ K KKK+R+ K V EE +DF      + 
Subjt:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT

Query:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        LA++FP RFL D Q E   IV CH ++  ++  +P  S E      DLS F++ DLLSLPQE K
Subjt:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

A0A5D3BE72 Ty3-gypsy retrotransposon protein3.5e-2941.41Show/hide
Query:  MADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKR
        + +V Q    A M     +L +++ E+       +  L+QFGT +PVVV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  QKE R +R+ +R
Subjt:  MADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKR

Query:  NVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
          K+Q+ K KKK+++ K + EE +DF      +TLA +FP RFL D Q E  E+V CH +D +E++ +P  S E      DL  F++ DLLSLPQE K
Subjt:  NVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

A0A5D3BSG5 Uncharacterized protein1.9e-3046.34Show/hide
Query:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT
        +  L+QFGT +PVVVRF +E   + SQEK   IE+++EGWT+V RRKK+K +  QKE R +R+ ++  K+Q+ K KKK+R+ K + EE +DF      +T
Subjt:  KNQLIQFGTLDPVVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPIT

Query:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK
        LA++FP RFL D Q E   +V CH ++ +E++++P  S E      DLS F++ DLLSLPQE K
Subjt:  LAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCTGCAGTCAAAGATAACCCGCTGTT
CGAATCTGTCATTCCAACATCTAAACAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAA
GAAAACTCAATCTCTTAATGAAGGTAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTC
CGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGC
ACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAG
ATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGAC
ATGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCAGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAA
AAAGCAGAAACAGAGCATTGTGAGGCTGAAGCAAAGGGAGCAAGTGGGAAATCAACCCATTGTTCGTGGGGATCGTGACGGGGACGCTCGGTCTCGGCCGACATTGAGTT
TACTTCTTCTTTCCCTCAACTTAGTTAGTGTTTATGGCTGTTTTAGACTATTGCTATATCGTAACATAGGGATATCGAGTTCAATTGCATATGGGAGAATCATGTATGCT
CGGGAGAGATATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCTGCAGTCAAAGATAACCCGCTGTT
CGAATCTGTCATTCCAACATCTAAACAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAA
GAAAACTCAATCTCTTAATGAAGGTAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTC
CGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGC
ACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAG
ATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGAC
ATGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCAGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAA
AAAGCAGAAACAGAGCATTGTGAGGCTGAAGCAAAGGGAGCAAGTGGGAAATCAACCCATTGTTCGTGGGGATCGTGACGGGGACGCTCGGTCTCGGCCGACATTGAGTT
TACTTCTTCTTTCCCTCAACTTAGTTAGTGTTTATGGCTGTTTTAGACTATTGCTATATCGTAACATAGGGATATCGAGTTCAATTGCATATGGGAGAATCATGTATGCT
CGGGAGAGATATGTGTGA
Protein sequenceShow/hide protein sequence
IEIKEDHTPLAVASRISKLIEESSKDRVAAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKVVDERDLEIAYLKNQLIQFGTLDPVVVRF
RKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYAQKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEESEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVD
MVEDDDVPASSSETVASPGDLSSFSIKDLLSLPQEAKKQKQSIVRLKQREQVGNQPIVRGDRDGDARSRPTLSLLLLSLNLVSVYGCFRLLLYRNIGISSSIAYGRIMYA
RERYV