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Spg010826 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010826
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:4879126..4879910
RNA-Seq ExpressionSpg010826
SyntenySpg010826
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]9.6e-1060.78Show/hide
Query:  STSKAPKHICTPMEDEVLVQCLLQLGHPAARGLKNKPFPYFDDLAIVFGKD
        ++S APKH+ T  E + LV+CL++L HPAA+GL NKPFPY+D+LA VFG D
Subjt:  STSKAPKHICTPMEDEVLVQCLLQLGHPAARGLKNKPFPYFDDLAIVFGKD

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-0938.21Show/hide
Query:  GHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------EGEEFYTTHPSRIETP----------------GSSWGSKRRRTVPS
        GHP ARGL NKPF YF DL IVFG+D A G                          E+F   +P  +E P                GSS  SK+RR+ P 
Subjt:  GHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------EGEEFYTTHPSRIETP----------------GSSWGSKRRRTVPS

Query:  DAVDTFRTEMRYVSTQIEKIALW
        D +DTFR  M+  S +I KIA W
Subjt:  DAVDTFRTEMRYVSTQIEKIALW

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-1134.34Show/hide
Query:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF
        MA + SKA KH  T +EDEVLV CLLQL                                                        GHP ARGL NKPFPYF
Subjt:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF

Query:  DDLAIVFGKDMANG---------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFR
         DL +VFG+D A G                GE+  +T  S     GSS  SK+RR+   D +DTFR
Subjt:  DDLAIVFGKDMANG---------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFR

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]2.1e-1230.92Show/hide
Query:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF
        MA + SKA KH  T +EDEVLV+CLLQL                                                        GHP A+GL NKPFPYF
Subjt:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF

Query:  DDLAIVFGKDMANG----------------------------------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQ
         DL +VFG+D A G                                         GE+  +T  S     GSS  SK+RR+   D +DTFR  MR  S +
Subjt:  DDLAIVFGKDMANG----------------------------------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQ

Query:  IEKIALW
        I KIA W
Subjt:  IEKIALW

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]7.1e-1333.73Show/hide
Query:  MALSTSKAPKHICTPMEDEVLVQCLLQ------------------LGHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------
        M  +  KA +H  T +EDE LV+CLLQ                  LGHP  R L NKPFPYF DL +VFG+D A G                        
Subjt:  MALSTSKAPKHICTPMEDEVLVQCLLQ------------------LGHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------

Query:  ----------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQIEKIALW
                         GE+  +T  S +    SS  SK+RR+   D +DTF   MR  S +I KIA W
Subjt:  ----------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQIEKIALW

TrEMBL top hitse value%identityAlignment
A0A5A7U4I8 Retrotransposon protein4.6e-1060.78Show/hide
Query:  STSKAPKHICTPMEDEVLVQCLLQLGHPAARGLKNKPFPYFDDLAIVFGKD
        ++S APKH+ T  E + LV+CL++L HPAA+GL NKPFPY+D+LA VFG D
Subjt:  STSKAPKHICTPMEDEVLVQCLLQLGHPAARGLKNKPFPYFDDLAIVFGKD

A0A5D3BC95 Retrotransposon protein7.9e-1038.21Show/hide
Query:  GHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------EGEEFYTTHPSRIETP----------------GSSWGSKRRRTVPS
        GHP ARGL NKPF YF DL IVFG+D A G                          E+F   +P  +E P                GSS  SK+RR+ P 
Subjt:  GHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------EGEEFYTTHPSRIETP----------------GSSWGSKRRRTVPS

Query:  DAVDTFRTEMRYVSTQIEKIALW
        D +DTFR  M+  S +I KIA W
Subjt:  DAVDTFRTEMRYVSTQIEKIALW

A0A5D3C542 Retrotransposon protein3.2e-1134.34Show/hide
Query:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF
        MA + SKA KH  T +EDEVLV CLLQL                                                        GHP ARGL NKPFPYF
Subjt:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF

Query:  DDLAIVFGKDMANG---------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFR
         DL +VFG+D A G                GE+  +T  S     GSS  SK+RR+   D +DTFR
Subjt:  DDLAIVFGKDMANG---------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFR

A0A5D3C7T4 Uncharacterized protein1.0e-1230.92Show/hide
Query:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF
        MA + SKA KH  T +EDEVLV+CLLQL                                                        GHP A+GL NKPFPYF
Subjt:  MALSTSKAPKHICTPMEDEVLVQCLLQL--------------------------------------------------------GHPAARGLKNKPFPYF

Query:  DDLAIVFGKDMANG----------------------------------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQ
         DL +VFG+D A G                                         GE+  +T  S     GSS  SK+RR+   D +DTFR  MR  S +
Subjt:  DDLAIVFGKDMANG----------------------------------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQ

Query:  IEKIALW
        I KIA W
Subjt:  IEKIALW

A0A5D3C7X6 Retrotransposon protein3.4e-1333.73Show/hide
Query:  MALSTSKAPKHICTPMEDEVLVQCLLQ------------------LGHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------
        M  +  KA +H  T +EDE LV+CLLQ                  LGHP  R L NKPFPYF DL +VFG+D A G                        
Subjt:  MALSTSKAPKHICTPMEDEVLVQCLLQ------------------LGHPAARGLKNKPFPYFDDLAIVFGKDMANG------------------------

Query:  ----------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQIEKIALW
                         GE+  +T  S +    SS  SK+RR+   D +DTF   MR  S +I KIA W
Subjt:  ----------------EGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQIEKIALW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTGTCTACTTCGAAAGCCCCTAAACATATCTGTACACCAATGGAAGATGAAGTTTTAGTCCAATGCCTGTTACAGTTGGGACACCCAGCTGCCCGTGGTCTGAA
GAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGGGAAGGATATGGCTAATGGAGAAGGTGAAGAATTTTATACCACCCATCCAAGCAGGATTGAGACGC
CAGGATCATCATGGGGAAGTAAGAGGAGGCGCACAGTGCCATCAGACGCTGTCGATACATTTCGCACAGAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTC
TGGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACTGTCTACTTCGAAAGCCCCTAAACATATCTGTACACCAATGGAAGATGAAGTTTTAGTCCAATGCCTGTTACAGTTGGGACACCCAGCTGCCCGTGGTCTGAA
GAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGGGAAGGATATGGCTAATGGAGAAGGTGAAGAATTTTATACCACCCATCCAAGCAGGATTGAGACGC
CAGGATCATCATGGGGAAGTAAGAGGAGGCGCACAGTGCCATCAGACGCTGTCGATACATTTCGCACAGAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTC
TGGCCTTAA
Protein sequenceShow/hide protein sequence
MALSTSKAPKHICTPMEDEVLVQCLLQLGHPAARGLKNKPFPYFDDLAIVFGKDMANGEGEEFYTTHPSRIETPGSSWGSKRRRTVPSDAVDTFRTEMRYVSTQIEKIAL
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