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Spg010860 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010860
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGeneral transcription factor IIH subunit 5-like
Genome locationscaffold10:9385785..9393331
RNA-Seq ExpressionSpg010860
SyntenySpg010860
Gene Ontology termsGO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
InterPro domainsIPR009400 - TFIIH subunit TTDA/Tfb5
IPR035935 - TFB5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2983.53Show/hide
Query:  FRCRL---RVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        FRC L       FDIMVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  FRCRL---RVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-2983.53Show/hide
Query:  FRCRL---RVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        FRC L       FDIMVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  FRCRL---RVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

XP_008448918.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo]6.5e-2891.43Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+FISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

XP_022152732.1 RNA polymerase II transcription factor B subunit 5 [Momordica charantia]6.5e-2892.86Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCD+PMAQFIINYNASLP+SQRFIIHILDNTHMFVQP VA MI+NAISEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

XP_038876808.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]3.8e-2892.86Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

TrEMBL top hitse value%identityAlignment
A0A0A0L4F5 Uncharacterized protein7.0e-2891.43Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+FISCDIPMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEFR+Q SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A1S3BK87 RNA polymerase II transcription factor B subunit 53.1e-2891.43Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+FISCD+PMAQFIINYNASLP+S RFIIHILDNTHMFVQPHVA+MIRNAISEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 53.1e-2892.86Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCD+PMAQFIINYNASLP+SQRFIIHILDNTHMFVQP VA MI+NAISEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 55.4e-2891.43Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X15.4e-2891.43Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKGLFISCDIPM QFIINYNASLP+S RFIIHILDNTHMFVQP+VA+MIRNA+SEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

SwissProt top hitse value%identityAlignment
Q2T9Z5 General transcription factor IIH subunit 58.6e-0736.36Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + S    ++FII  +D+TH+FV   +  +++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Q5ZKH0 General transcription factor IIH subunit 53.0e-0739.39Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + S    ++FII  LD TH+FV   +   ++  + E  DQNS+
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Q6NNM0 General transcription and DNA repair factor IIH subunit TFB59.8e-2777.14Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P SQ+FIIH+LD+TH+FVQPHV +MIR+AIS+FRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

Q6ZYL4 General transcription factor IIH subunit 58.6e-0736.36Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + S    ++FII  +D+TH+FV   +  +++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Q8K2X8 General transcription factor IIH subunit 51.9e-0634.85Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY
        MVN +KG+ I CD  M QF++  + +    ++FII  +D+TH+FV   +  +++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSY

Arabidopsis top hitse value%identityAlignment
AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA6.9e-2877.14Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P SQ+FIIH+LD+TH+FVQPHV +MIR+AIS+FRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA2.0e-1964.29Show/hide
Query:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHI--LDNTHMFVQPHVAEMIRNAISEFRDQNSYEK
        MVN+IKG+FISCD+PMAQFI + N SLP+SQ+FII +  LD T MFV+P+  EMIR+A+ +FRD+NSY K
Subjt:  MVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHI--LDNTHMFVQPHVAEMIRNAISEFRDQNSYEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGAAGAAAACACCGCTCTCTTTCTCTCGCTGCACGCCGCCCGCCGAAGCCGCACACCGCCTCCCGCCGTCGATCTCCGCCGCACGCCGCACTCCGCCCGCCAAC
GTCGCACGCCGTTCGCCGCCGTGAGTTCTCTCTCTCGGCTGTAGCACGCGAGCTCCGCGCCTCCGCCGTCGTCCTTCGCTACGTAGCCGCCGGTGAGCACTCAGCCCCCC
CTCTCTCTCGTCTATTTCTCCCTCAATCTCACTCTCTCTCAGCACCCCTTCTCTCTTCTGTAACAGATTTGCGCCGCCCCTCTGTCCACGCTCGTCTGCACGACCACCGC
TGCAAGACGCTCGCCGTCGCTGCCGCTGGACCCTTTCAGTTAAATTTGTTCCGCTGCCGGTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATT
CATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCGTTGCCTTCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTAC
AACCCCATGTAGCTGAGATGATTCGAAATGCCATTTCAGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGAAGAAAACACCGCTCTCTTTCTCTCGCTGCACGCCGCCCGCCGAAGCCGCACACCGCCTCCCGCCGTCGATCTCCGCCGCACGCCGCACTCCGCCCGCCAAC
GTCGCACGCCGTTCGCCGCCGTGAGTTCTCTCTCTCGGCTGTAGCACGCGAGCTCCGCGCCTCCGCCGTCGTCCTTCGCTACGTAGCCGCCGGTGAGCACTCAGCCCCCC
CTCTCTCTCGTCTATTTCTCCCTCAATCTCACTCTCTCTCAGCACCCCTTCTCTCTTCTGTAACAGATTTGCGCCGCCCCTCTGTCCACGCTCGTCTGCACGACCACCGC
TGCAAGACGCTCGCCGTCGCTGCCGCTGGACCCTTTCAGTTAAATTTGTTCCGCTGCCGGTTGAGGGTGGACGTTTTTGACATCATGGTTAATGCCATTAAAGGGCTATT
CATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCGTTGCCTTCATCCCAAAGATTTATCATCCATATTTTGGATAATACCCACATGTTTGTAC
AACCCCATGTAGCTGAGATGATTCGAAATGCCATTTCAGAATTTCGAGATCAGAATTCTTATGAGAAACCTACTTGA
Protein sequenceShow/hide protein sequence
MWRRKHRSLSLAARRPPKPHTASRRRSPPHAALRPPTSHAVRRREFSLSAVARELRASAVVLRYVAAGEHSAPPLSRLFLPQSHSLSAPLLSSVTDLRRPSVHARLHDHR
CKTLAVAAAGPFQLNLFRCRLRVDVFDIMVNAIKGLFISCDIPMAQFIINYNASLPSSQRFIIHILDNTHMFVQPHVAEMIRNAISEFRDQNSYEKPT