; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010861 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010861
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold10:6001232..6002974
RNA-Seq ExpressionSpg010861
SyntenySpg010861
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1760.64Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   K F+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1761.7Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.2e-1761.7Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]1.2e-1750.77Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGS-
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE   K  G+ 
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGS-

Query:  --YDVRNYVVP--SSSSSRRFIRRCLVVPS
           +++++  P  S S S + ++ C   PS
Subjt:  --YDVRNYVVP--SSSSSRRFIRRCLVVPS

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]3.0e-1862.77Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.2e-1760.64Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   K F+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

A0A5A7TQ06 Retrotransposon gag protein5.6e-1861.7Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

A0A5A7VHY3 Uncharacterized protein5.6e-1850.77Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGS-
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE   K  G+ 
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGS-

Query:  --YDVRNYVVP--SSSSSRRFIRRCLVVPS
           +++++  P  S S S + ++ C   PS
Subjt:  --YDVRNYVVP--SSSSSRRFIRRCLVVPS

A0A5D3BBF9 Gag protease polyprotein5.6e-1861.7Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

A0A5D3E2D7 Gag protease polyprotein1.5e-1862.77Show/hide
Query:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMK+K SV I TE SL
Subjt:  MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTTAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGTTCGAGGGTTCTTATGATGTACGCAACTACGTTGTTCCCTCTTCT
TCAAGTTCCCGAAGGTTCATACGGCGCTGCCTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGC
TAGGCTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCACATGCTGTGGTGTTGCCC
GCTGCTTCATTCTCCCTCCAAGTTCGAAGGTTCTGACGTTGCACTACTTCCTTCACCAAGTTCGAAGGTTCTCACGTTTCGCTGCATCCTTCACCAAGTTCGAAGGTTCG
CATGTTATTCGCTGCTTCGCTGCTGTTCCCTTTTCAAGTTTGAAGGTTCACTTGGCGTTGCTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGATTCTACTCTGCTTTC
TTTTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTTTCCTTCTCCAAGTACGAAGTGGCAAAAGTCCAAGGAACATGTCCCTGCACTGATGCTGGAAGGCGTGG
CGGCGACAAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTCGAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAG
CAAAAGTCCAAAGAACATGTCCAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGAAAGGCGTGGCGGTGGCAAAAGTCCAAGGAACAT
GTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAACAAAAGTACAAGGAACATGTCCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGATAACTTAGATGTTAAATTGTTCAATGAAGTATGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAAGAAGTTCTCCGTTCTCATAACTACAGAAGTTTCTTTGAAGTTCGAGGGTTCTTATGATGTACGCAACTACGTTGTTCCCTCTTCT
TCAAGTTCCCGAAGGTTCATACGGCGCTGCCTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTTTCATGCTACGC
TAGGCTGCGCTATTGCACTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCATTCTCCAAGTTCGAAAGTTCACATGCTGTGGTGTTGCCC
GCTGCTTCATTCTCCCTCCAAGTTCGAAGGTTCTGACGTTGCACTACTTCCTTCACCAAGTTCGAAGGTTCTCACGTTTCGCTGCATCCTTCACCAAGTTCGAAGGTTCG
CATGTTATTCGCTGCTTCGCTGCTGTTCCCTTTTCAAGTTTGAAGGTTCACTTGGCGTTGCTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGATTCTACTCTGCTTTC
TTTTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTTTCCTTCTCCAAGTACGAAGTGGCAAAAGTCCAAGGAACATGTCCCTGCACTGATGCTGGAAGGCGTGG
CGGCGACAAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCGACAAAAGTCGAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAG
CAAAAGTCCAAAGAACATGTCCAAAGTCCAAGGAACATGTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGTTGAAAGGCGTGGCGGTGGCAAAAGTCCAAGGAACAT
GTCCAAAGTCCAAGGAACATGTCCTTGCACTCATGCTGGAAGGCGTGGCGGCAACAAAAGTACAAGGAACATGTCCAAATAA
Protein sequenceShow/hide protein sequence
MSMATTEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKIDNLDVKLFNEVCSDKKLQSSIPSRMKKKFSVLITTEVSLKFEGSYDVRNYVVPSS
SSSRRFIRRCLVVPSPSSKVLKLCCFLLQVRRFSCYARLRYCTTSFFKFEGSHIALLCCFILQVRKFTCCGVARCFILPPSSKVLTLHYFLHQVRRFSRFAASFTKFEGS
HVIRCFAAVPFSSLKVHLALLRCSFSKFEGSDSTLLSFPRSKVLVLRCFAFPSPSTKWQKSKEHVPALMLEGVAATKVQGTCPCTHAGRRGGDKSRRNMSLHSCWKAWRQ
QKSKEHVQSPRNMSKVQGTCPCTHVERRGGGKSPRNMSKVQGTCPCTHAGRRGGNKSTRNMSK