CuGenDBv2

Gene ID	Spg010867
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Genome location	scaffold10:8300715..8303312
RNA-Seq Expression	Spg010867
Synteny	Spg010867
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042501.1 retrotransposon protein [Cucumis melo var. makuwa]

9.0e-25

60.95

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Query:  PEMNCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRG
        P  NCLG LDGTYIKV+V A DRP +RTR                           SAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRG
Subjt:  PEMNCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRG

Query:  ERYHL
        +RYHL
Subjt:  ERYHL

KAA0048383.1 retrotransposon protein [Cucumis melo var. makuwa]

6.9e-25

62.75

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLGTLDGTYIKV+V A DRP +RTR                           SAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRG+RY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL
        HL
Subjt:  HL

KAA0054344.1 retrotransposon protein [Cucumis melo var. makuwa]

6.9e-25

58.97

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLG LDGTYIKV+V A DR RYRTR                           SAADSR+LRDA+SRPNGL V KGYYYL DVGYPNAEGFLAPYRG+RY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL---IGNL--IASNLY
        HL   + NL  + S LY
Subjt:  HL---IGNL--IASNLY

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]

1.3e-26

65.69

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLG LDGTYIKV+VSA DRPRYRTR                           SAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRGERY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL
        HL
Subjt:  HL

XP_008459131.1 PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo]

1.2e-24

62.75

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLG LDGTYIKV+V A DR RYRTR                           SAADSR+LRDA+SRPNGL V KGYYYL DVGYPNAEGFLAPYRG+RY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL
        HL
Subjt:  HL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1U8 putative nuclease HARBI1

6.1e-27

65.69

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLG LDGTYIKV+VSA DRPRYRTR                           SAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRGERY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL
        HL
Subjt:  HL

A0A1S3C8Z4 uncharacterized protein LOC103498331

5.7e-25

62.75

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLG LDGTYIKV+V A DR RYRTR                           SAADSR+LRDA+SRPNGL V KGYYYL DVGYPNAEGFLAPYRG+RY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL
        HL
Subjt:  HL

A0A5A7TLQ0 Retrotransposon protein

4.4e-25

60.95

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Query:  PEMNCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRG
        P  NCLG LDGTYIKV+V A DRP +RTR                           SAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRG
Subjt:  PEMNCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRG

Query:  ERYHL
        +RYHL
Subjt:  ERYHL

A0A5A7TXM1 Retrotransposon protein

3.3e-25

62.75

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLGTLDGTYIKV+V A DRP +RTR                           SAADSR+LRDAISR NGL V KGYYYLCD GYPNAEGFLAPYRG+RY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL
        HL
Subjt:  HL

A0A5A7UGR5 Retrotransposon protein

3.3e-25

58.97

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Query:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY
        NCLG LDGTYIKV+V A DR RYRTR                           SAADSR+LRDA+SRPNGL V KGYYYL DVGYPNAEGFLAPYRG+RY
Subjt:  NCLGTLDGTYIKVHVSAVDRPRYRTR---------------------------SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERY

Query:  HL---IGNL--IASNLY
        HL   + NL  + S LY
Subjt:  HL---IGNL--IASNLY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

9.3e-04

40.62

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Query:  SAADSRVLRDAIS-RPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYH----LIGNLIASNLY
        S  D+RVL  AIS  P   +     YYL D GY N  G+LAPYR E       +  N +  NL+
Subjt:  SAADSRVLRDAIS-RPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYH----LIGNLIASNLY

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.8e-05

48.98

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Query:  SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHL
        SA DSRVL DA+ +          +YL D G+ N   FLAP+RG RYHL
Subjt:  SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.5e-06

52.27

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Query:  SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRG
        SA+D +VL  A++R N L V +G YY+ D  YPN  GF+APY G
Subjt:  SAADSRVLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRG

Sequences

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CDS sequence

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ATGCAAATTTTAGAGACAAAATTAGATCTACGATCGGCTCTGATACCAATTGAAGGATTAGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCTGCGA
ACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGAGTCCACAGGAAGCCTTGAGGGGAATTCTCTGAGACCCCCATTCGGTC
TTGCCCCTGAAATGAATTGTTTAGGAACATTGGACGGTACGTACATAAAGGTTCATGTTAGTGCGGTTGATCGACCAAGATATAGGACGCGTTCGGCTGCTGATTCTCGT
GTACTCAGGGATGCGATATCACGCCCGAACGGACTAATAGTGTCGAAGGGCTACTACTACCTTTGTGATGTCGGGTACCCAAACGCAGAGGGTTTCTTGGCACCTTACAG
AGGAGAGCGGTACCACTTGATTGGAAATTTAATCGCTTCTAATTTATATTGA

mRNA sequence

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Protein sequence

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MQILETKLDLRSALIPIEGLEFRNSVKRKRDWDRFCEHHHYGYTGMTLRLLEAGDWWESTGSLEGNSLRPPFGLAPEMNCLGTLDGTYIKVHVSAVDRPRYRTRSAADSR
VLRDAISRPNGLIVSKGYYYLCDVGYPNAEGFLAPYRGERYHLIGNLIASNLY

Spg010867 (gene) of Sponge gourd (cylindrica) v1 genome