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Spg010880 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010880
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:5186801..5190050
RNA-Seq ExpressionSpg010880
SyntenySpg010880
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]2.1e-1668.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE    RTSAFDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

KAA0054152.1 uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa]1.6e-1668.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE+   RTSAFDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]1.6e-1668.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE  + RTS FDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

TYK25790.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-1669.44Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITVEE+ DS + KE    R SAFDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]1.2e-1668.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE  + RTS FDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H1.0e-1668.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE    RTSAFDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

A0A5A7UEC9 Uncharacterized protein7.8e-1768.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGH IP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE+   RTSAFDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

A0A5A7UMY2 Reverse transcriptase domain-containing protein7.8e-1768.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITV+E+D  E+ KE  + RTS FDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

A0A5D3DR73 Ty3-gypsy retrotransposon protein1.3e-1669.44Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D  HITVEE+ DS + KE    R SAFDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

A0A5D3DXC7 Reverse transcriptase domain-containing protein6.0e-1768.06Show/hide
Query:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV
        T KKL +EGHVIP SR GLGYKSPEP+RITRKGK KV D+ HITV+E+D  E+ KE  + RTS FDRI P V
Subjt:  TLKKLQKEGHVIPTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGA
TCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGCCCCAGAAAATGACT
TCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTAAGAAACTTCAAAAGGAGGGTCATGTTATA
CCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGA
TGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGATATGGACCCAGATGGCAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTATTTGGCTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATCAGA
TCCTGACGTGATGTCTGTAATGATGGCTTACATAGGCACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGCCCCAGAAAATGACT
TCCCAGAAAGGGCTCTCTACGATGAGGATATTCAAGAAAAGATTAAGCAAATTGAAGACAAAGATGGAGGTTGGACACTTAAGAAACTTCAAAAGGAGGGTCATGTTATA
CCCACCTCAAGAGCTGGCCTTGGATATAAATCCCCTGAGCCGGTTCGAATCACAAGGAAAGGGAAAGCGAAAGTTGCAGATACGCTTCATATTACAGTGGAAGAAATCGA
TGATTCCGAACAGGCTAAAGAAAACATAGATCATAGAACTTCTGCATTTGATCGCATTGGACCGTTTGTTACATGA
Protein sequenceShow/hide protein sequence
MIWTQMAEPNQGGMVIQENPLFGYSTSSSEQAKETSDPDVMSVMMAYIGTGEERMAELERKVNMLMKAAPENDFPERALYDEDIQEKIKQIEDKDGGWTLKKLQKEGHVI
PTSRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPFVT