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Spg010885 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010885
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:6576718..6577173
RNA-Seq ExpressionSpg010885
SyntenySpg010885
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]5.1e-0636.28Show/hide
Query:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPR
        GG+GW+ RD  G  I AG     R  +  + EA A++E L   +E   +  +V VESDSL ++K LN ED++  E + IL  +  ++     + F + PR
Subjt:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPR

Query:  VQNVAAHGIAHVA
          N AAH +A  A
Subjt:  VQNVAAHGIAHVA

CAB4273082.1 unnamed protein product [Prunus armeniaca]2.2e-0940.54Show/hide
Query:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        MGG+GW+ RDS+G ++ AG K   R  +   MEA AI+E LVA ++  S   ++EVESDSLQ+++ + GE  +      I+  I  +   F+   F + P
Subjt:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGIA
        R  N AAH IA
Subjt:  RVQNVAAHGIA

CAB4279811.1 unnamed protein product [Prunus armeniaca]6.4e-0940.91Show/hide
Query:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        MGG+GW+ RDS G ++ AG K   R  +   MEA AI+E L+A ++  S   ++EVESDSLQ+++ L GE  I    + I+  I  +   F+   F + P
Subjt:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGI
        R  N AAH I
Subjt:  RVQNVAAHGI

XP_021800524.1 uncharacterized protein LOC110744812 [Prunus avium]9.3e-0837.84Show/hide
Query:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNG-LEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        GG+GW+ R   G L+ AG ++I       V EA AI++ ++ +  H  NG L VEVESDS +I++ + G+ +  +E + IL  I  +   F+ + F+H P
Subjt:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNG-LEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGIA
        R+ N AAH +A
Subjt:  RVQNVAAHGIA

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]2.3e-0638.53Show/hide
Query:  LGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIE-HFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPRV
        LG + RD EG L CAG K +  N +I  +EA A+  GL+   E  F N   + VESDS  ++  LN  ++ LS    +LD I  +A  F+ + +K   R 
Subjt:  LGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIE-HFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPRV

Query:  QNVAAHGIA
         N+AAH +A
Subjt:  QNVAAHGIA

TrEMBL top hitse value%identityAlignment
A0A251QFD7 RNase H domain-containing protein2.5e-0632.06Show/hide
Query:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIE-HFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        GG GW+ RD  G ++ AG K+ RR  +  + E  AI+  +VA  +  FS+   + VESDSL  ++ + G+ ++ +E + +L  I  +    + +TF + P
Subjt:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIE-HFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGIAHVAAA------WTTLPASFL
        R  N+AAH +A  A        W  +P  +L
Subjt:  RVQNVAAHGIAHVAAA------WTTLPASFL

A0A4Y1R838 Ribonuclease H-like superfamily protein2.5e-0636.28Show/hide
Query:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPR
        GG+GW+ RD  G  I AG     R  +  + EA A++E L   +E   +  +V VESDSL ++K LN ED++  E + IL  +  ++     + F + PR
Subjt:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPR

Query:  VQNVAAHGIAHVA
          N AAH +A  A
Subjt:  VQNVAAHGIAHVA

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.1e-0940.54Show/hide
Query:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        MGG+GW+ RDS+G ++ AG K   R  +   MEA AI+E LVA ++  S   ++EVESDSLQ+++ + GE  +      I+  I  +   F+   F + P
Subjt:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGIA
        R  N AAH IA
Subjt:  RVQNVAAHGIA

A0A6J5UV01 Reverse transcriptase domain-containing protein3.1e-0940.91Show/hide
Query:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        MGG+GW+ RDS G ++ AG K   R  +   MEA AI+E L+A ++  S   ++EVESDSLQ+++ L GE  I    + I+  I  +   F+   F + P
Subjt:  MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGI
        R  N AAH I
Subjt:  RVQNVAAHGI

A0A6P5RC34 uncharacterized protein LOC1107448124.5e-0837.84Show/hide
Query:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNG-LEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP
        GG+GW+ R   G L+ AG ++I       V EA AI++ ++ +  H  NG L VEVESDS +I++ + G+ +  +E + IL  I  +   F+ + F+H P
Subjt:  GGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNG-LEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCP

Query:  RVQNVAAHGIA
        R+ N AAH +A
Subjt:  RVQNVAAHGIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGGCTTAGGGTGGCTTGCCCGTGACTCCGAAGGATCTCTCATCTGCGCGGGGATGAAACAAATTCGAAGGAACTGGGCGATCAACGTGATGGAAGCTTCAGCGAT
CAAAGAAGGTCTGGTAGCGTTGATTGAGCACTTCAGCAACGGTTTGGAGGTTGAAGTCGAATCTGATTCTCTCCAAATTGTAAAGTGCCTAAACGGAGAAGACATGATTT
TGTCAGAAAGCAAAAATATTTTGGACGCCATTTCCACCATGGCTCCCCTGTTCAAGGTGCTTACCTTCAAGCACTGTCCGAGAGTCCAGAATGTTGCGGCTCACGGAATC
GCGCACGTTGCTGCCGCATGGACAACGCTTCCTGCGAGTTTTTTGCTGGTCAGGGGCTCTCTTCCACGCTGGGAGATGAAGCATTTTTTTTGTTGGATCGATATGACAAC
CCTAGAGGAGGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGGCTTAGGGTGGCTTGCCCGTGACTCCGAAGGATCTCTCATCTGCGCGGGGATGAAACAAATTCGAAGGAACTGGGCGATCAACGTGATGGAAGCTTCAGCGAT
CAAAGAAGGTCTGGTAGCGTTGATTGAGCACTTCAGCAACGGTTTGGAGGTTGAAGTCGAATCTGATTCTCTCCAAATTGTAAAGTGCCTAAACGGAGAAGACATGATTT
TGTCAGAAAGCAAAAATATTTTGGACGCCATTTCCACCATGGCTCCCCTGTTCAAGGTGCTTACCTTCAAGCACTGTCCGAGAGTCCAGAATGTTGCGGCTCACGGAATC
GCGCACGTTGCTGCCGCATGGACAACGCTTCCTGCGAGTTTTTTGCTGGTCAGGGGCTCTCTTCCACGCTGGGAGATGAAGCATTTTTTTTGTTGGATCGATATGACAAC
CCTAGAGGAGGGGTGA
Protein sequenceShow/hide protein sequence
MGGLGWLARDSEGSLICAGMKQIRRNWAINVMEASAIKEGLVALIEHFSNGLEVEVESDSLQIVKCLNGEDMILSESKNILDAISTMAPLFKVLTFKHCPRVQNVAAHGI
AHVAAAWTTLPASFLLVRGSLPRWEMKHFFCWIDMTTLEEG