; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010901 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010901
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold10:6998755..7002911
RNA-Seq ExpressionSpg010901
SyntenySpg010901
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KHJ41186.1 ribosomal protein S15 [Trichuris suis]1.6e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
KRX22653.1 40S ribosomal protein S13 [Trichinella nelsoni]3.6e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
KRY33283.1 U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella spiralis]3.6e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
KRY56989.1 40S ribosomal protein S13 [Trichinella britovi]3.6e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
KRY69987.1 U3 small nucleolar RNA-associated protein 15 -like protein [Trichinella pseudospiralis]3.6e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
TrEMBL top hitse value%identityAlignment
A0A0B1PKQ1 40S ribosomal protein S137.8e-0960.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
A0A0V0WEM0 40S ribosomal protein S131.7e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
A0A0V1KWP3 40S ribosomal protein S131.7e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
A0A1Y3EJD5 40S ribosomal protein S131.7e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
A0A5S6QVF7 40S ribosomal protein S131.3e-0860.66Show/hide
Query:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
        G   ++W+     L     +GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E
Subjt:  GCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREE
SwissProt top hitse value%identityAlignment
P59223 40S ribosomal protein S13-16.8e-1080.95Show/hide
Query:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Subjt:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
P59224 40S ribosomal protein S13-26.8e-1080.95Show/hide
Query:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Subjt:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
P62299 40S ribosomal protein S132.0e-0974.42Show/hide
Query:  QGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        +G+APEI EDLYHLIK+ V+IRKHLERNRKDKDSK+R I  E+
Subjt:  QGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
P62300 40S ribosomal protein S132.0e-0974.42Show/hide
Query:  QGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        +G+APEI EDLYHLIK+ V+IRKHLERNRKDKDSK+R I  E+
Subjt:  QGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
P62302 40S ribosomal protein S133.0e-1083.33Show/hide
Query:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        GLAPEI EDLYHLIK+ VSIRKHLERNRKDKDSKFR I  E+
Subjt:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S154.8e-1180.95Show/hide
Query:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Subjt:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
AT4G00100.1 ribosomal protein S13A4.8e-1180.95Show/hide
Query:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN
        GLAPEI EDLYHLIK+ V+IRKHLERNRKDKDSKFR I  E+
Subjt:  GLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREEN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAACGAGACCAAGAAAAGAGAGAGATAATGAGGAAGGGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAAGAGAAAGAAAACACCAGAAGAGAA
AGAGGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGCCCCGCCGCCGATCCGCCGTCGCCGTCGCCAGTCCGTCGCGCCGCCCTGCCT
TCTCGCACGCTCTCTCTCTCCGTCGTTCTCCAGTTCGTCTCCCTCTCTCTATCTCCGTTCTGCCCGCAAATCCGGCTCACGCCGTCGTTGTGTCCCCATCGGAGTATCGC
GCTGCCGTCGACCAACGCTCATGGTTAGTCGTCGATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCAAGTGGTCACCGGTCATGGCTACGCTAGA
AAATGCTGGAAGGCAAGGACTAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGGAACCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGATAAGG
ATTCCAAGTTCAGAGGAATTCGAGAGGAAAATACAGAGGATGTTCAGGAAACAGGCAATGAGCAGGGGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCGGAA
GTGCCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACCCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGACGAATTCTGAGAAAGAAAATGCAGAAAGAGA
GGAACAAGAGAAAAAGGAGGTTGTTGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGGAAGAAGCTTTGACAAAGCATCAAGAAGACAGAGGCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAAACGAGACCAAGAAAAGAGAGAGATAATGAGGAAGGGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAAGAGAAAGAAAACACCAGAAGAGAA
AGAGGCTAAGAGGAGAAGAAGACAGCAGAGGGCTGAGGATCAAGAAATAGTGCAGAAGCCCCGCCGCCGATCCGCCGTCGCCGTCGCCAGTCCGTCGCGCCGCCCTGCCT
TCTCGCACGCTCTCTCTCTCCGTCGTTCTCCAGTTCGTCTCCCTCTCTCTATCTCCGTTCTGCCCGCAAATCCGGCTCACGCCGTCGTTGTGTCCCCATCGGAGTATCGC
GCTGCCGTCGACCAACGCTCATGGTTAGTCGTCGATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCAAGTGGTCACCGGTCATGGCTACGCTAGA
AAATGCTGGAAGGCAAGGACTAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGGAACCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGATAAGG
ATTCCAAGTTCAGAGGAATTCGAGAGGAAAATACAGAGGATGTTCAGGAAACAGGCAATGAGCAGGGGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCGGAA
GTGCCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACCCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGACGAATTCTGAGAAAGAAAATGCAGAAAGAGA
GGAACAAGAGAAAAAGGAGGTTGTTGACAGAGCGAGAGAGGAAGCAAGAAAGAAAGCAGCGGAAGAAGCTTTGACAAAGCATCAAGAAGACAGAGGCAAATGA
Protein sequenceShow/hide protein sequence
MAKTRPRKERDNEEGEVPVTPEAPKAKAKRKKTPEEKEAKRRRRQQRAEDQEIVQKPRRRSAVAVASPSRRPAFSHALSLRRSPVRLPLSISVLPANPAHAVVVSPSEYR
AAVDQRSWLVVDGFWLWFLVGFGCGFLKWSPVMATLENAGRQGLAPEISEDLYHLIKEPVSIRKHLERNRKDKDSKFRGIREENTEDVQETGNEQGEQEQEARVEVIMPE
VPKRRRVKRKAGPVKVVRTDTPSPPSTNSEKENAEREEQEKKEVVDRAREEARKKAAEEALTKHQEDRGK