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Spg010941 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010941
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:8102743..8105002
RNA-Seq ExpressionSpg010941
SyntenySpg010941
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.7e-1940.93Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEF
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K     +   +   T+NLW F+   L      +  +    S +  + ++ 
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEF

Query:  DVYFINFGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGI-----VRGDDVCWLHAVFRAKLTGGPGGGV
         ++ ++  SVLR    + +        +VEIELP+PDTLPT AES  S+SSTW  +   S  +     +    +  LH VF   ++ GP G +
Subjt:  DVYFINFGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGI-----VRGDDVCWLHAVFRAKLTGGPGGGV

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]6.3e-2252.63Show/hide
Query:  ELNQKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSR
        E NQ LY+VSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAESS 
Subjt:  ELNQKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSR

Query:  SSSSTWFNVSVRSTGIVRGDDVCWLHAVFRAKL
        S+SS        S GIVRGDDVCWLHAVFRAK+
Subjt:  SSSSTWFNVSVRSTGIVRGDDVCWLHAVFRAKL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-3240.15Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIW----------------------VQTVNLWCF---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+H RIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIW----------------------VQTVNLWCF---------------

Query:  --------------IRFELHRRNQELNQKLYVVSC-------------------------------RVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP
                      I   +    + L+ +LY   C                                V     + V  +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELHRRNQELNQKLYVVSC-------------------------------RVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRSSSSTWFNV-------------------SVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        VPDTLPTSAESS S+SSTW                       VRS GIVR +DVCWLHAVFRAK+ GG GGGVT
Subjt:  VPDTLPTSAESSRSSSSTWFNV-------------------SVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]2.4e-2149.28Show/hide
Query:  QKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSS
        QKLY+VSCRV ENE+F VYFIN G VLRKLWVLEVR                                          VEIELPVPDTLPT         
Subjt:  QKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSS

Query:  STWFNVSVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGV
        +  +     S GIVRGDDVCWLHAV RAK+ GGPGGGV
Subjt:  STWFNVSVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGV

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]5.7e-2339.46Show/hide
Query:  PFKLSEHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEFDVYFINFGSVLRKL
        P +L E F  R     + + +E+  R   +RL K    S K     ++   +++      E+H+     NQKLY+VSCRVFENE F VYFINFG VLRKL
Subjt:  PFKLSEHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEFDVYFINFGSVLRKL

Query:  WVLEVR-----------------------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGI
        WVLE R                                                           VEIELPVPDTLPTSAES        F  + RS GI
Subjt:  WVLEVR-----------------------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGI

Query:  VRGDDVCWLHAVFRAKLTGGPGG
        VRGDDVCWLHAVFRAK  G PGG
Subjt:  VRGDDVCWLHAVFRAKLTGGPGG

TrEMBL top hitse value%identityAlignment
A0A5D3BQ75 Uncharacterized protein3.0e-2252.63Show/hide
Query:  ELNQKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSR
        E NQ LY+VSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAESS 
Subjt:  ELNQKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSR

Query:  SSSSTWFNVSVRSTGIVRGDDVCWLHAVFRAKL
        S+SS        S GIVRGDDVCWLHAVFRAK+
Subjt:  SSSSTWFNVSVRSTGIVRGDDVCWLHAVFRAKL

A0A5D3BZ50 Pentatricopeptide repeat-containing protein8.3e-2044.32Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHSRIWVQTVNLWCFIRFELHRRNQEL--------NQKLYV
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ+L        + K  V
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHSRIWVQTVNLWCFIRFELHRRNQEL--------NQKLYV

Query:  V------SCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGIVRGDDVCWLHAVF
        +      S +  E ++  ++ ++  SVLR     +  VEIELPVPD LPTSA+SS S+       S+ STGIVRGDDV WL   F
Subjt:  V------SCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGIVRGDDVCWLHAVF

A0A5D3CAC6 Uncharacterized protein8.5e-3340.15Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIW----------------------VQTVNLWCF---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+H RIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIW----------------------VQTVNLWCF---------------

Query:  --------------IRFELHRRNQELNQKLYVVSC-------------------------------RVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP
                      I   +    + L+ +LY   C                                V     + V  +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELHRRNQELNQKLYVVSC-------------------------------RVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRSSSSTWFNV-------------------SVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT
        VPDTLPTSAESS S+SSTW                       VRS GIVR +DVCWLHAVFRAK+ GG GGGVT
Subjt:  VPDTLPTSAESSRSSSSTWFNV-------------------SVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.2e-2149.28Show/hide
Query:  QKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSS
        QKLY+VSCRV ENE+F VYFIN G VLRKLWVLEVR                                          VEIELPVPDTLPT         
Subjt:  QKLYVVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSS

Query:  STWFNVSVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGV
        +  +     S GIVRGDDVCWLHAV RAK+ GGPGGGV
Subjt:  STWFNVSVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGV

A0A5D3CSJ5 Putative polyprotein2.7e-2339.46Show/hide
Query:  PFKLSEHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEFDVYFINFGSVLRKL
        P +L E F  R     + + +E+  R   +RL K    S K     ++   +++      E+H+     NQKLY+VSCRVFENE F VYFINFG VLRKL
Subjt:  PFKLSEHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEFDVYFINFGSVLRKL

Query:  WVLEVR-----------------------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGI
        WVLE R                                                           VEIELPVPDTLPTSAES        F  + RS GI
Subjt:  WVLEVR-----------------------------------------------------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGI

Query:  VRGDDVCWLHAVFRAKLTGGPGG
        VRGDDVCWLHAVFRAK  G PGG
Subjt:  VRGDDVCWLHAVFRAKLTGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTCCAGAATCTGGGTGCAAACTGTCAACCTCTGGTGTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGTTGAATCAGAAGCTCTATGTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTT
GGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTAC
GTGGTTCAACGTTTCAGTAAGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAACAGGTGGTCCGGGAGGGGGTGTGA
CAAGAATTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTCCAGAATCTGGGTGCAAACTGTCAACCTCTGGTGTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGTTGAATCAGAAGCTCTATGTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTT
GGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTAC
GTGGTTCAACGTTTCAGTAAGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAACAGGTGGTCCGGGAGGGGGTGTGA
CAAGAATTGATTGA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHSRIWVQTVNLWCFIRFELHRRNQELNQKLYVVSCRVFENEEFDVYFINF
GSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFNVSVRSTGIVRGDDVCWLHAVFRAKLTGGPGGGVTRID