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Spg010960 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010960
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:25422791..25423701
RNA-Seq ExpressionSpg010960
SyntenySpg010960
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]2.8e-2466.98Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS RLYGTVCTQ                 VEIELPV DTL   AES  S+SSYF NQVMSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.3e-2565.74Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +                YF NQVMSGLH V    F+VS+GSTGIVRGDDVCWLHAVFR K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGVT
          PG  VT
Subjt:  GGPGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-2280.26Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.2e-2867.27Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGGVTP
         GGP GGV P
Subjt:  AGGPGGGVTP

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-2260.91Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS +    +  +H   VE F ++    GIVR DDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGGVTP
        AGGPGGGV P
Subjt:  AGGPGGGVTP

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.6e-2565.74Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +                YF NQVMSGLH V    F+VS+GSTGIVRGDDVCWLHAVFR K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPGGGVT
          PG  VT
Subjt:  GGPGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.3e-2280.26Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.5e-2867.27Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGGVTP
         GGP GGV P
Subjt:  AGGPGGGVTP

A0A5D3DIE3 Retrotrans_gag domain-containing protein1.3e-2466.98Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS RLYGTVCTQ                 VEIELPV DTL   AES  S+SSYF NQVMSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGG
        AGGPGG
Subjt:  AGGPGG

A0A5D3DX39 Reverse transcriptase4.8e-2260.91Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS +    +  +H   VE F ++    GIVR DDVCWLHAVFRAK 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGGVTP
        AGGPGGGV P
Subjt:  AGGPGGGVTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGTGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACCTACGGTGGCTGTTGCTCTAAACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGTGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACCTACGGTGGCTGTTGCTCTAAACCTCTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTPTVAVALNL