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Spg010961 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010961
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:27570691..27575125
RNA-Seq ExpressionSpg010961
SyntenySpg010961
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]4.0e-1178Show/hide
Query:  RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        RPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SSTW+ELY ES+
Subjt:  RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.4e-1172.73Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVF
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+ +  +F
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVF

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]5.2e-1177.55Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS S+SSTW+ELY ES+
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]4.4e-1079.59Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        PRGNR SLQTR+L KT  IELPVPDTLPTSAESS S+SSTW+ELY ES+
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.4e-1181.63Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.9e-1178Show/hide
Query:  RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        RPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SSTW+ELY ES+
Subjt:  RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

A0A5A7UAH6 CCHC-type domain-containing protein6.6e-1272.73Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVF
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+ +  +F
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESICIVNVF

A0A5A7V2F2 Uncharacterized protein2.5e-1177.55Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS S+SSTW+ELY ES+
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

A0A5D3BET3 Uncharacterized protein6.6e-1281.63Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ES+
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

A0A5D3DWP3 Uncharacterized protein2.1e-1079.59Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI
        PRGNR SLQTR+L KT  IELPVPDTLPTSAESS S+SSTW+ELY ES+
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSTWVELYIESI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAGAGGCCCAAAAGAAATGAAGTTGGCCCAAGAATTGAAGCCCAAAACGCGCTTGAAAGTTCTGGAATTCGCCTAGCATCGAGACGCTGTAGGGACAACGTCCT
GTCCTATTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGTGACGCTGTGCCCATAGCGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATATGTGTTTTCTGTGTTC
GGGGCATTTCTGGACAAATAGGTTGGGAATCTCGTTTTGATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAGTAGAGATCGAG
CTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTATCTGTATTGTAAATGTTTTTGAAAG
GATTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAGAGGCCCAAAAGAAATGAAGTTGGCCCAAGAATTGAAGCCCAAAACGCGCTTGAAAGTTCTGGAATTCGCCTAGCATCGAGACGCTGTAGGGACAACGTCCT
GTCCTATTTCTTGGCCGGCAAGTCGATGACGTCACAGCGTCGTGACGCTGTGCCCATAGCGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATATGTGTTTTCTGTGTTC
GGGGCATTTCTGGACAAATAGGTTGGGAATCTCGTTTTGATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAGTAGAGATCGAG
CTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTATCTGTATTGTAAATGTTTTTGAAAG
GATTGGATAA
Protein sequenceShow/hide protein sequence
MRKRPKRNEVGPRIEAQNALESSGIRLASRRCRDNVLSYFLAGKSMTSQRRDAVPIARKIEGSREARICVFCVRGISGQIGWESRFDFFRPRGNRSSLQTRKLAKTVEIE
LPVPDTLPTSAESSSSSSSTWVELYIESICIVNVFERIG