; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010988 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010988
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome locationscaffold4:28012088..28013813
RNA-Seq ExpressionSpg010988
SyntenySpg010988
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145820.1 uncharacterized protein LOC111015181 [Momordica charantia]1.8e-3253.06Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E     RRH VD ID + +QV +  LD  VDL+   C CREF+Y++I CSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR+T RIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

XP_022146373.1 uncharacterized protein LOC111015601 [Momordica charantia]6.7e-3252.38Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E    +RRH VD ID + +QV +  LD  VDL+   C+CREF+Y++I CSHAIAAA  RN+N  +LC  AY T   IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR+T RIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

XP_022154610.1 uncharacterized protein LOC111021833 [Momordica charantia]2.3e-3252.38Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E    +RRH VD ID + +QV +G  D  VDL+   C+CREF+Y++I CSH IAAA  RN+N  +LC  AY T S IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR T RIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

XP_022155156.1 uncharacterized protein LOC111022299 [Momordica charantia]1.0e-3247.95Show/hide
Query:  RSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYP
        R+S L++Y E ++  A +++R+H + PID YEY+V +G     V+L+ + CTC++F+YY+I CSHA+ A   RNV++ TLCSP Y  ++++ +YAEPIYP
Subjt:  RSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYP

Query:  VCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        +    +W    +F E  + PPK VARVGRRQTVRIPSAGE  Q+ +
Subjt:  VCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

XP_022159268.1 uncharacterized protein LOC111025678 [Momordica charantia]9.3e-3454.42Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E    +RRH VD ID + +QV +G LD  VDL+   C+CREF+Y++I CSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR+TVRIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

TrEMBL top hitse value%identityAlignment
A0A6J1CVL4 uncharacterized protein LOC1110151818.5e-3353.06Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E     RRH VD ID + +QV +  LD  VDL+   C CREF+Y++I CSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR+T RIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

A0A6J1CYE7 uncharacterized protein LOC1110156013.2e-3252.38Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E    +RRH VD ID + +QV +  LD  VDL+   C+CREF+Y++I CSHAIAAA  RN+N  +LC  AY T   IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR+T RIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

A0A6J1DK35 uncharacterized protein LOC1110218331.1e-3252.38Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E    +RRH VD ID + +QV +G  D  VDL+   C+CREF+Y++I CSH IAAA  RN+N  +LC  AY T S IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR T RIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

A0A6J1DQV1 uncharacterized protein LOC1110222995.0e-3347.95Show/hide
Query:  RSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYP
        R+S L++Y E ++  A +++R+H + PID YEY+V +G     V+L+ + CTC++F+YY+I CSHA+ A   RNV++ TLCSP Y  ++++ +YAEPIYP
Subjt:  RSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYP

Query:  VCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        +    +W    +F E  + PPK VARVGRRQTVRIPSAGE  Q+ +
Subjt:  VCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

A0A6J1DYC4 uncharacterized protein LOC1110256784.5e-3454.42Show/hide
Query:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY
        +RS+ LS+YAEN+  E    +RRH VD ID + +QV +G LD  VDL+   C+CREF+Y++I CSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+
Subjt:  NRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIY

Query:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ
        PV  +S W  S EF  + + PPK V RVGRR+TVRIPS GE  Q ++
Subjt:  PVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase2.8e-0424.21Show/hide
Query:  DCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYPVCPMSEWKRSAEFQEMELLPPKR
        D ++      + ++ V L++  CTCR+F+ Y+  C HA+A      +N        Y  +    +YA    PV  ++ W          L PP +
Subjt:  DCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEISCSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYPVCPMSEWKRSAEFQEMELLPPKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAACTTCATAAATCCATAAAGTACATGACCGAATTATCTCACGAATTGAAATTGCGGGATCAAGCAAGAGAGGCACAAATCACAAAATCCATTCAAGAAGAAGA
AGATTGTCCCATGCCTAAAGATGATGTTTCAAAGGATGATGTTGTTGTTGATGACGTGGTGACCAGCGAAGAAAGTGTGCAAACGTATGTTGATCCTTCCTTTGAGACAA
AAAGTGAGGAAAGTGAAAAAGAGAAAGAGTGTGAGAAAGAAATAATTGAAGCTTATATTGAGATTGAAGAGAAAGAGAGTTCATTTATTAGAGTATGTGAGGAGACCCAT
GTTTTGTATTCAAAAAGACACATACAAGAACTTGTATCCGAAAGGACTTACTTTCTAATGGGTGCACTTAAACCAAGTGTACCTAGTTTGTCTAATGAGTTCTTGCAGAA
AATTAAAATGCTTGTTGAAACGCAAGATTCAAACAATGCTTCAAATACGAGACAAAGCCAAGCACGAGGGAACTTTAATGCCAAAGGGGAACAAATGAAGCGATGTTTGT
ATTTTGCTTCATCATCCATTCAGGGTGGACAGTCAAAGGTGAAGAATTTGAAGAGAGCAAGAATGCGAGATGCAAAAGATTTCAAGTTTGCACTACAAGGGGATCCTTGG
ATTCGAGGACGAATCCTCTTGAAGAAGGGGAGGATGATACGAACCGAGAAACGAGTTTTCTCTACTCTTGATCTTGATCGTCAAGGGATTTGCATAACCATAAGGGATCT
TAGATCCAATTGGCTCGGGCTGCCATATCATAACCGATCTTCGAGGTTATCAGAGTACGCAGAGAACCTATTGATGGAAGCCGAGAAGAAGTCTCGAAGGCATAATGTGG
ACCCGATTGATTGCTACGAATATCAAGTAGACGAAGGACAGCTAGACTTTCATGTCGACTTGCACATGAGGCCGTGCACTTGTCGAGAGTTTGAGTACTACGAGATTTCA
TGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCGGCATATCACACAAAATCTGTGATCCTATCATACGCAGAACCAATATA
TCCTGTTTGCCCTATGTCTGAGTGGAAGAGATCCGCTGAATTTCAAGAGATGGAGCTATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGTCAGACTGTTCGAATAC
CATCTGCAGGGGAGAGACCTCAAGTACAACAAGTTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAACTTCATAAATCCATAAAGTACATGACCGAATTATCTCACGAATTGAAATTGCGGGATCAAGCAAGAGAGGCACAAATCACAAAATCCATTCAAGAAGAAGA
AGATTGTCCCATGCCTAAAGATGATGTTTCAAAGGATGATGTTGTTGTTGATGACGTGGTGACCAGCGAAGAAAGTGTGCAAACGTATGTTGATCCTTCCTTTGAGACAA
AAAGTGAGGAAAGTGAAAAAGAGAAAGAGTGTGAGAAAGAAATAATTGAAGCTTATATTGAGATTGAAGAGAAAGAGAGTTCATTTATTAGAGTATGTGAGGAGACCCAT
GTTTTGTATTCAAAAAGACACATACAAGAACTTGTATCCGAAAGGACTTACTTTCTAATGGGTGCACTTAAACCAAGTGTACCTAGTTTGTCTAATGAGTTCTTGCAGAA
AATTAAAATGCTTGTTGAAACGCAAGATTCAAACAATGCTTCAAATACGAGACAAAGCCAAGCACGAGGGAACTTTAATGCCAAAGGGGAACAAATGAAGCGATGTTTGT
ATTTTGCTTCATCATCCATTCAGGGTGGACAGTCAAAGGTGAAGAATTTGAAGAGAGCAAGAATGCGAGATGCAAAAGATTTCAAGTTTGCACTACAAGGGGATCCTTGG
ATTCGAGGACGAATCCTCTTGAAGAAGGGGAGGATGATACGAACCGAGAAACGAGTTTTCTCTACTCTTGATCTTGATCGTCAAGGGATTTGCATAACCATAAGGGATCT
TAGATCCAATTGGCTCGGGCTGCCATATCATAACCGATCTTCGAGGTTATCAGAGTACGCAGAGAACCTATTGATGGAAGCCGAGAAGAAGTCTCGAAGGCATAATGTGG
ACCCGATTGATTGCTACGAATATCAAGTAGACGAAGGACAGCTAGACTTTCATGTCGACTTGCACATGAGGCCGTGCACTTGTCGAGAGTTTGAGTACTACGAGATTTCA
TGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCGGCATATCACACAAAATCTGTGATCCTATCATACGCAGAACCAATATA
TCCTGTTTGCCCTATGTCTGAGTGGAAGAGATCCGCTGAATTTCAAGAGATGGAGCTATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGTCAGACTGTTCGAATAC
CATCTGCAGGGGAGAGACCTCAAGTACAACAAGTTCATTAG
Protein sequenceShow/hide protein sequence
MDELHKSIKYMTELSHELKLRDQAREAQITKSIQEEEDCPMPKDDVSKDDVVVDDVVTSEESVQTYVDPSFETKSEESEKEKECEKEIIEAYIEIEEKESSFIRVCEETH
VLYSKRHIQELVSERTYFLMGALKPSVPSLSNEFLQKIKMLVETQDSNNASNTRQSQARGNFNAKGEQMKRCLYFASSSIQGGQSKVKNLKRARMRDAKDFKFALQGDPW
IRGRILLKKGRMIRTEKRVFSTLDLDRQGICITIRDLRSNWLGLPYHNRSSRLSEYAENLLMEAEKKSRRHNVDPIDCYEYQVDEGQLDFHVDLHMRPCTCREFEYYEIS
CSHAIAAARDRNVNVATLCSPAYHTKSVILSYAEPIYPVCPMSEWKRSAEFQEMELLPPKRVARVGRRQTVRIPSAGERPQVQQVH