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Spg010991 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010991
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:27723051..27723593
RNA-Seq ExpressionSpg010991
SyntenySpg010991
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.9e-1531.49Show/hide
Query:  MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKS----VESNI-KDWEIEYLSAPLKGRSW-SHGNQEL------WEAPKPNSWKLNSDAAW
        +V+ L+ EE+A  +++ W IW  RN+          + L +S    + SNI K   I       +   +   G + L      W AP  N WKLN+DA+W
Subjt:  MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKS----VESNI-KDWEIEYLSAPLKGRSW-SHGNQEL------WEAPKPNSWKLNSDAAW

Query:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELS
        SE+   GGIGW++ D  G ++  G+  I     I  LE  TI+ G++ +     + R P+ +ESD++EVIR++  +  +L+
Subjt:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.6e-1430.77Show/hide
Query:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL-------------WEAPKPNSWKLNSDAAW
        +D    EE  + +I+ W IW  RNK       P    +Q +++  I +      +  LKG+S    N++L             W+ P  NSWKLN++AAW
Subjt:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL-------------WEAPKPNSWKLNSDAAW

Query:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSE
            N GGIGW++ D  G +I    + I     I  LE   I EG+R +     R   P+ +ESD++E I +L    ++ +E
Subjt:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSE

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.5e-1230.54Show/hide
Query:  MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNI-----KDWEIEYLSAPLKG-RSWSHGNQELWEAPKPNSWKLNSDAAWSEKENC
        ++D    EE  + +I+   IW  RNK            +Q +++  I     +D  ++  S      R      +  W+ P  NSWKLN+DAAW    N 
Subjt:  MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNI-----KDWEIEYLSAPLKG-RSWSHGNQELWEAPKPNSWKLNSDAAWSEKENC

Query:  GGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVL
         GIGW++ D  G +I  G + I     I  LE   I EG+R +     R   P+ +ESD++E I +L
Subjt:  GGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.9e-1633.51Show/hide
Query:  MVDNLNAEEIAKGLILMWSIWTYRNKI----EHSHFVPAAEHLQKSVESNIKDWEIEYLS-APLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCG
        M+D  + E++   LI  W IW +RN +    EHS F    + L K V       E  Y S   L     +  N+  WE P  + W LN+DA+WS+  + G
Subjt:  MVDNLNAEEIAKGLILMWSIWTYRNKI----EHSHFVPAAEHLQKSVESNIKDWEIEYLS-APLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCG

Query:  GIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSIIS
        GIGW++   +G ++  G++ +     +K LEA  ILEG+R + +    R  PL IE+D+ EV  +L    E+L++T  V + I++
Subjt:  GIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSIIS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.9e-1330.1Show/hide
Query:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEI---EYL------SAPLKGRSWSHGNQEL-------------WEAPKPNS
        +D    EE  + +I+ W IW  RNK            + K V S  +D ++    Y+         LKG+S    N++L             W+ P  NS
Subjt:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEI---EYL------SAPLKGRSWSHGNQEL-------------WEAPKPNS

Query:  WKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSR-----RRIPLDIESDAMEVIRVLVGDAEELSE
        WKLN+DAAW    N GGIGW++ D  G +I    + I     I  LE   I EG+R +     R        P+ +ESD++E I +L    ++ +E
Subjt:  WKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSR-----RRIPLDIESDAMEVIRVLVGDAEELSE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.7e-1530.77Show/hide
Query:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL-------------WEAPKPNSWKLNSDAAW
        +D    EE  + +I+ W IW  RNK       P    +Q +++  I +      +  LKG+S    N++L             W+ P  NSWKLN++AAW
Subjt:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL-------------WEAPKPNSWKLNSDAAW

Query:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSE
            N GGIGW++ D  G +I    + I     I  LE   I EG+R +     R   P+ +ESD++E I +L    ++ +E
Subjt:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSE

A0A6J1CQG0 uncharacterized protein LOC1110132169.1e-1631.49Show/hide
Query:  MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKS----VESNI-KDWEIEYLSAPLKGRSW-SHGNQEL------WEAPKPNSWKLNSDAAW
        +V+ L+ EE+A  +++ W IW  RN+          + L +S    + SNI K   I       +   +   G + L      W AP  N WKLN+DA+W
Subjt:  MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKS----VESNI-KDWEIEYLSAPLKGRSW-SHGNQEL------WEAPKPNSWKLNSDAAW

Query:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELS
        SE+   GGIGW++ D  G ++  G+  I     I  LE  TI+ G++ +     + R P+ +ESD++EVIR++  +  +L+
Subjt:  SEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELS

A0A6J1D4B6 uncharacterized protein LOC1110171817.2e-1332.14Show/hide
Query:  GLILMWSIWTYRNKIEHSHF-VPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICC
        GL+L+WSIWTYRN+I HS    P ++ ++   ES I ++    L   L     +      W  P  + WKLN DA W +  + GG+GW+V DS G  I  
Subjt:  GLILMWSIWTYRNKIEHSHF-VPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLICC

Query:  GS-KAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSI
           KA+S++    TLEA                  I +++ESD +EV+ ++   +  L+E  ++ + I
Subjt:  GS-KAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSI

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-1633.51Show/hide
Query:  MVDNLNAEEIAKGLILMWSIWTYRNKI----EHSHFVPAAEHLQKSVESNIKDWEIEYLS-APLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCG
        M+D  + E++   LI  W IW +RN +    EHS F    + L K V       E  Y S   L     +  N+  WE P  + W LN+DA+WS+  + G
Subjt:  MVDNLNAEEIAKGLILMWSIWTYRNKI----EHSHFVPAAEHLQKSVESNIKDWEIEYLS-APLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCG

Query:  GIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSIIS
        GIGW++   +G ++  G++ +     +K LEA  ILEG+R + +    R  PL IE+D+ EV  +L    E+L++T  V + I++
Subjt:  GIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSIIS

A0A6J1DSV1 uncharacterized protein LOC1110236081.9e-1330.1Show/hide
Query:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEI---EYL------SAPLKGRSWSHGNQEL-------------WEAPKPNS
        +D    EE  + +I+ W IW  RNK            + K V S  +D ++    Y+         LKG+S    N++L             W+ P  NS
Subjt:  VDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEI---EYL------SAPLKGRSWSHGNQEL-------------WEAPKPNS

Query:  WKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSR-----RRIPLDIESDAMEVIRVLVGDAEELSE
        WKLN+DAAW    N GGIGW++ D  G +I    + I     I  LE   I EG+R +     R        P+ +ESD++E I +L    ++ +E
Subjt:  WKLNSDAAWSEKENCGGIGWVVHDSNGSLICCGSKAISRNWPIKTLEAKTILEGMRMVADTCSR-----RRIPLDIESDAMEVIRVLVGDAEELSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-0626.02Show/hide
Query:  LMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL-------WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSL
        LMW IW   N +  +H        Q +VE  + D + E+L   +      +GN+         W  P  +  K N DA+  E+    G+GW++ +S G++
Subjt:  LMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQEL-------WEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSL

Query:  ICCGSKAISRNWPIKTLEAKTIL
        I CG          +  E  T++
Subjt:  ICCGSKAISRNWPIKTLEAKTIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATAATCTCAACGCCGAGGAGATTGCAAAAGGGCTGATTTTAATGTGGAGTATATGGACGTATAGGAATAAAATTGAACATTCTCATTTTGTTCCAGCAGCAGA
GCATTTACAGAAAAGCGTGGAAAGCAACATCAAAGATTGGGAAATTGAGTACCTATCAGCTCCGTTGAAGGGAAGATCTTGGAGCCACGGGAATCAAGAATTGTGGGAAG
CCCCAAAGCCGAACTCCTGGAAGCTTAATTCAGACGCAGCGTGGAGCGAGAAAGAGAATTGCGGAGGAATCGGTTGGGTGGTTCATGATTCGAATGGATCCCTGATTTGT
TGTGGATCGAAAGCGATTAGTCGAAATTGGCCCATTAAAACGTTGGAGGCTAAAACGATTTTAGAAGGGATGAGAATGGTGGCGGATACCTGTTCTCGGCGCCGGATCCC
TCTCGATATTGAGTCTGATGCCATGGAGGTCATCAGAGTCTTGGTAGGCGATGCGGAAGAATTATCGGAGACGAAAGTTGTAACGGACTCGATCATCAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATAATCTCAACGCCGAGGAGATTGCAAAAGGGCTGATTTTAATGTGGAGTATATGGACGTATAGGAATAAAATTGAACATTCTCATTTTGTTCCAGCAGCAGA
GCATTTACAGAAAAGCGTGGAAAGCAACATCAAAGATTGGGAAATTGAGTACCTATCAGCTCCGTTGAAGGGAAGATCTTGGAGCCACGGGAATCAAGAATTGTGGGAAG
CCCCAAAGCCGAACTCCTGGAAGCTTAATTCAGACGCAGCGTGGAGCGAGAAAGAGAATTGCGGAGGAATCGGTTGGGTGGTTCATGATTCGAATGGATCCCTGATTTGT
TGTGGATCGAAAGCGATTAGTCGAAATTGGCCCATTAAAACGTTGGAGGCTAAAACGATTTTAGAAGGGATGAGAATGGTGGCGGATACCTGTTCTCGGCGCCGGATCCC
TCTCGATATTGAGTCTGATGCCATGGAGGTCATCAGAGTCTTGGTAGGCGATGCGGAAGAATTATCGGAGACGAAAGTTGTAACGGACTCGATCATCAGCTAA
Protein sequenceShow/hide protein sequence
MVDNLNAEEIAKGLILMWSIWTYRNKIEHSHFVPAAEHLQKSVESNIKDWEIEYLSAPLKGRSWSHGNQELWEAPKPNSWKLNSDAAWSEKENCGGIGWVVHDSNGSLIC
CGSKAISRNWPIKTLEAKTILEGMRMVADTCSRRRIPLDIESDAMEVIRVLVGDAEELSETKVVTDSIIS